Detail information of GWHGAAZE012916


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009761365.10PREDICTED: probable pectate lyase 13 isoform X1 [Nicotiana sylvestris]
Swissprottr|Q9SCP2|PLY12_ARATH0Probable pectate lyase 12 (Precursor)
trEMBLtr|E7BTN2|E7BTN2_VITVI0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT3G53190.17E-154Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9373654193743188+
GWHAAZE00000003mRNA9373654193743188+
GWHAAZE00000003exon9373654193736765+
GWHAAZE00000003exon9373704393737528+
GWHAAZE00000003exon9373818893738379+
GWHAAZE00000003exon9374049193740696+
GWHAAZE00000003exon9374276793743188+
GWHAAZE00000003CDS9373654193736765+
GWHAAZE00000003CDS9373704393737528+
GWHAAZE00000003CDS9373818893738379+
GWHAAZE00000003CDS9374049193740696+
GWHAAZE00000003CDS9374276793743025+
GWHAAZE00000003three_prime_UTR9374302693743188+
Transcript Sequence

Network for GWHGAAZE012916

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41062891.40E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.786
SRR3591706second leaf52.614
SRR3591707mature leaf5.953
SRR3591708Shoot apex85.533
SRR3591709Stem28.998
SRR3591710White floral bud10.476
SRR3591711White flower4.487
SRR3591712Green floral bud39.785
SRR3591713Yellow flower0.272
SRP173429 SRR8316895Juvenile bud stage 34.898
SRR8316896Juvenile bud stage 37.842
SRR8316897Juvenile bud stage 17.087
SRR8316894Third green stage 17.129
SRR8316900Third green stage 41.677
SRR8316901Third green stage 40.445
SRR8316898Complete white stage 3.806
SRR8316899Complete white stage 45.954
SRR8316903Complete white stage 5.681
SRR8316902Silver flowering stage0.242
SRR8316904Silver flowering stage0.418
SRR8316905Silver flowering stage0.282
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.298
SRR8316908Gold flowering stage 0.411
SRP132670SRR6706286Control33.362
SRR6706287Light intensity 50%41.743
SRR6706288Light intensity 20%45.628
CNP0000432CNS0095592Slightly white alabastrum(diploid) 169.503
CNS0095593Slightly white alabastrum(diploid) 286.460
CNS0095594Slightly white alabastrum(diploid) 363.321
CNS0095595Whole white alabastrum(diploid) 247.791
CNS0095596Whole white alabastrum(diploid) 349.492
CNS0095597Whole white alabastrum(diploid) 439.877
CNS0095598Silvery flower (diploied) 125.961
CNS0095599Silvery flower (diploied) 221.961
CNS0095600Silvery flower (diploied) 37.102
CNS0095601Golden flower (diploid) 118.019
CNS0095602Golden flower (diploid) 27.553
CNS0095603Golden flower (diploid) 37.987
CNS0095604Slightly white alabastrum(tetraploid) 148.266
CNS0095605Slightly white alabastrum(tetraploid) 241.409
CNS0095606Slightly white alabastrum(tetraploid) 386.339
CNS0095607Whole white alabastrum(tetraploid) 126.900
CNS0095608Whole white alabastrum(tetraploid) 217.884
CNS0095609Whole white alabastrum(tetraploid) 334.906
CNS0095610Silvery flower (diploied) 10.238
CNS0095611Silvery flower (diploied) 22.226
CNS0095612Silvery flower (diploied) 31.420
CNS0095613Golden flower (tetraploid) 10.205
CNS0095614Golden flower (tetraploid) 20.228
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 185.792
CRR073298Stem 285.922
CRR073299Stem 3107.060
CRR073300Leaf 1100.118
CRR073301Leaf 294.587
CRR073302Leaf 3108.058
CRR073303Juvenile bud 183.254
CRR073304Juvenile bud 268.388
CRR073305Juvenile bud 396.063
CRR073306Third green 14.558
CRR073307Third green 27.116
CRR073308Third green 34.551
CRR073309Second white 10.084
CRR073310Second white 20.034
CRR073311Second white 30.122
CRR073312Silver flowering 10.075
CRR073313Silver flowering 20.367
CRR073314Silver flowering 30.000
CRR073315Gold flowering 119.110
CRR073316Gold flowering 227.075
CRR073317Gold flowering 333.674
CRR073318Tawny withering 186.906
CRR073319Tawny withering 267.571
CRR073320Tawny withering 398.682