Gene detail

Detail information of GWHGAAZE012931

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006481243.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform X2 [Citrus sinensis]
Swissprot	tr\|C0LGD7\|Y1684_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At1g06840 (Precursor)
trEMBL	tr\|A0A061EH88\|A0A061EH88_THECC	Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY04390.1}
TAIR10	AT5G01950.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	93924334	93934012	-
GWHAAZE00000003	mRNA	93924334	93934012	-
GWHAAZE00000003	exon	93933919	93934012	-
GWHAAZE00000003	exon	93933194	93933344	-
GWHAAZE00000003	exon	93932897	93932968	-
GWHAAZE00000003	exon	93932712	93932783	-
GWHAAZE00000003	exon	93932230	93932373	-
GWHAAZE00000003	exon	93932065	93932136	-
GWHAAZE00000003	exon	93931875	93931946	-
GWHAAZE00000003	exon	93931551	93931625	-
GWHAAZE00000003	exon	93930846	93930914	-
GWHAAZE00000003	exon	93930360	93930431	-
GWHAAZE00000003	exon	93930081	93930167	-
GWHAAZE00000003	exon	93929917	93929985	-
GWHAAZE00000003	exon	93929030	93929550	-
GWHAAZE00000003	exon	93928147	93928341	-
GWHAAZE00000003	exon	93927769	93928052	-
GWHAAZE00000003	exon	93927115	93927166	-
GWHAAZE00000003	exon	93926115	93926365	-
GWHAAZE00000003	exon	93924334	93924726	-
GWHAAZE00000003	CDS	93933919	93934012	-
GWHAAZE00000003	CDS	93933194	93933344	-
GWHAAZE00000003	CDS	93932897	93932968	-
GWHAAZE00000003	CDS	93932712	93932783	-
GWHAAZE00000003	CDS	93932230	93932373	-
GWHAAZE00000003	CDS	93932065	93932136	-
GWHAAZE00000003	CDS	93931875	93931946	-
GWHAAZE00000003	CDS	93931551	93931625	-
GWHAAZE00000003	CDS	93930846	93930914	-
GWHAAZE00000003	CDS	93930360	93930431	-
GWHAAZE00000003	CDS	93930081	93930167	-
GWHAAZE00000003	CDS	93929917	93929985	-
GWHAAZE00000003	CDS	93929030	93929550	-
GWHAAZE00000003	CDS	93928147	93928341	-
GWHAAZE00000003	CDS	93927769	93928052	-
GWHAAZE00000003	CDS	93927115	93927166	-
GWHAAZE00000003	CDS	93926115	93926365	-
GWHAAZE00000003	CDS	93924334	93924726	-

Transcript Sequence
>GWHTAAZE012945 ATGGCGAGGTTGCGACTATCTGGATGTGTTTTGGCCGTGTCATTTTATTGCTTCCTGCTACATACAGTTGCACAAGTTACTGATCCCTCTGAAGTCTTTGCATTGCTGGCTGTTAAGAGCAATTTAGTTGATCATTCAAAGCATCTTAAGAATTGGAATAAGGGGGATCCATGTACATCAAACTGGACAGGAGTTCTATGCTTTGATACGATCGGGAGTGATGGGCACTTCCACGTTCAGGAACTCCAGCTACTTAATATGAATCTATCCGGAACTTTAGCACCTGAGCTTGGTCAACTATCTCGTCTTCAGATATTAGATTTCATGTGGAATGAATTAACTGGCAGTATCCCGAAGGATATAGGGAATATTGCATCTTTGAAGCTCCTGCTATTGAATGGAAACAAATTATCAGGTAGCTTACCTGATGAGCTGGGGTATCTTTCAAATTTAAAAAGACTCCAAGTGGACACGAACCAGATATCTGGACCAGTACCCAGTTCATTTTCAAACCTGAAAAGTGTTAGACATATTCACTTGAACAATAACTCAATCAGTGGTCAAATTCCATCTGATCTTTCCAACTTGTCCAATCTAATTCACTTGCTTTTGGATAATAATAACTTGTCTGGTTATCTTCCACCGGAGTTTTCAAAGTTGCCAGAATTTCGCATACTTCAACTCGATAACAACAATTTTAATGGGGCTGAAATTCCCGCTTCCTACGGAAACATGTCAAAATTAGCAAAGTTAAGTCTTAGGAATTGCAGGTTGCAGGGAGCCGTACCTGATCTAAGCATGATACCTAACCTTAGCTATATTGATCTTTCAGATAACCGGCTGAATGGATCTATTCCTGGAAGTTTCTCAGATCTTCCTTCTCTTCAGAAACTGTCACTTGAGAATAATTTTTTGAGTGGTTCTATCCCTGCTAACATATGGGTAAACAAGTCCTTTGGTGCATCTGCAAGACTTCTACTTGATCTTCAAAATAACTCGCTTTCAAACATTTCCGGTGTACTTAATCCTCCAGAAAATGTTACCCTAAGGCTCCAAGGCAACCCTATCTGCAGCAATGTAAACATAAGAAATGCAGACCACTTCTGCAGGCCTGAAGTTGGAGAGGATGAGGATACATTTGTGTACTCAAAAAATTCAACCATGATTTGTCCTATTCAAGCATGTCCGTTTGATAATTATTTTGAATATGTCCCAGCATCCCCTTTGCCATGCTTTTGCGCTTCACCTCTTAGAATTGGATATCGTCTTAAGAGTCCCAGTTTCTCTTATTTCGCTCCATATTTATATCCATTTGAGATGTACCTGACCAGTGCTCTTCACTTGGACACATATCAACTATCTATTGACTCATTAGTCTGGGAAAAAGGACCTCGTTTGAGGATGTATCTGAAGCTTTTCCCAATGGCGGCAGTTAATCACTCAAATACCTTCAATACAAGTGAGATTCTGTGCATCAGAGGCAAATTCACATCCTGGGAATTTGCTGGTAGTGACTTGTTTGGACCTTATGAGCTTCTCAATTTCACTCTTTTGGGACCTTACTCTTATGGACACGTAGGCTCACCTTATCTTTCTCTAGTTGCAGTGAATCTTGAGACCCAAGGTAAAGGCATGAGAAAGGGCCTTTTGATAGCACTTGTATTAGTGGCAGTTGCCTGTGCTGTGATAATATCTGCGCTAGTGACAGTTTTTATTACAAGAAGACGGGCTAGATACCTGCTTACGCTCTCAAAAAAACGTTTATCCTCGAAGCATTCTTTAAAAATTGACGGTGTTAAAAGCTTCACCTTCGAAGAAATGGCATTGGCAACTGACTATTTCAGTAGCTCAGCTCTAATTGGCCAAGGCGGTTATGGGAATGTTTATAAAGGAATTTTATCTGACAATACAATTGTAGCCATAAAGCGTGCAAGAGAAGGATCCTTGCAGGGTGAAAAAGAGTTCTTAACGGAGATAGAAATGTTATCAAGGTTACATCATCGAAACCTAGTTTCACTGATAGGGTACTGTGATGAAGAAGCGGAGCAGATGCTGGCTTATGAGTTTATGCCTAATGGCACATTGCAAGATTGGCTTTCAGCAAAATTGAAGGAAACATTGAATTTTGGGATGAGGTTACGGATTGCATTGGGTTCAGCTAAGGGCATTCTTTATCTTCATACTGAAGCGTACCCACCTATATTCCACCGAGATATCAAAGCCAGCAACATTCTTCTGGACTCTAAACTTACTGCTAAAGTGGCTGATTTTGGGCTCTCACGACTTGCACCTGTCCTGGATGATGAAGGTTCTGTGCCTGATCATGTATCCACTATTGTAAAGGGGACACCTGTGAATCTGGCTCATCAGGAGGGGAGAGTGTTGTCCCTCATAGACAGCAGAATGGGTTCATGCCCATCAGATTGTATAGAAAAGTTTGTAGGTTTGGCACTTGTGTGTTGCCAGGACAAGCCAGAAAAGAGGCCATCAATGCTGGATGTGGTGAGGGAGCTTGAAAACATCCTCAAAATCATGCCAAAACCCGAAGCTGACTTGTCAAACTCTGCCGCGTCAGCATGTTTTAGTGAATCAGCAGCATCATCTTCTTCTTTGGCCTATGCAAGCAGTAGGGACCCACTTGTATCCGACACCGCCAATGCAAGTAGTAGGGACCCGTTTGTATCCTCAAATATGTCTGGAAGTGATCTTACCAGCAGTGTCGTCCCCATTATCACTCCTCGCTGA

Network for GWHGAAZE012931

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	29	67	2.30E-09
PF13855.7	LRR_8	247	303	5.20E-10
PF07714.18	PK_Tyr_Ser-Thr	618	763	3.00E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VIII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.076
	SRR3591706	second leaf	10.192
	SRR3591707	mature leaf	20.656
	SRR3591708	Shoot apex	4.526
	SRR3591709	Stem	6.687
	SRR3591710	White floral bud	1.026
	SRR3591711	White flower	0.874
	SRR3591712	Green floral bud	4.910
	SRR3591713	Yellow flower	0.228
SRP173429	SRR8316895	Juvenile bud stage	1.451
	SRR8316896	Juvenile bud stage	3.858
	SRR8316897	Juvenile bud stage	0.998
	SRR8316894	Third green stage	3.078
	SRR8316900	Third green stage	9.887
	SRR8316901	Third green stage	8.275
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	11.303
	SRR8316903	Complete white stage	0.835
	SRR8316902	Silver flowering stage	0.184
	SRR8316904	Silver flowering stage	0.179
	SRR8316905	Silver flowering stage	0.079
	SRR8316906	Gold flowering stage	0.546
	SRR8316907	Gold flowering stage	0.285
	SRR8316908	Gold flowering stage	0.385
SRP132670	SRR6706286	Control	4.130
	SRR6706287	Light intensity 50%	3.775
	SRR6706288	Light intensity 20%	4.641
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.441
	CNS0095593	Slightly white alabastrum(diploid) 2	2.594
	CNS0095594	Slightly white alabastrum(diploid) 3	2.395
	CNS0095595	Whole white alabastrum(diploid) 2	2.112
	CNS0095596	Whole white alabastrum(diploid) 3	2.267
	CNS0095597	Whole white alabastrum(diploid) 4	2.112
	CNS0095598	Silvery flower (diploied) 1	1.885
	CNS0095599	Silvery flower (diploied) 2	1.023
	CNS0095600	Silvery flower (diploied) 3	0.557
	CNS0095601	Golden flower (diploid) 1	1.768
	CNS0095602	Golden flower (diploid) 2	0.911
	CNS0095603	Golden flower (diploid) 3	0.823
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.621
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.828
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.900
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.568
	CNS0095610	Silvery flower (diploied) 1	0.945
	CNS0095611	Silvery flower (diploied) 2	1.928
	CNS0095612	Silvery flower (diploied) 3	0.253
	CNS0095613	Golden flower (tetraploid) 1	0.390
	CNS0095614	Golden flower (tetraploid) 2	0.870
	CNS0095615	Golden flower (tetraploid) 3	0.213
CRA001975	CRR073297	Stem 1	2.050
	CRR073298	Stem 2	2.396
	CRR073299	Stem 3	1.110
	CRR073300	Leaf 1	5.620
	CRR073301	Leaf 2	5.555
	CRR073302	Leaf 3	1.823
	CRR073303	Juvenile bud 1	2.734
	CRR073304	Juvenile bud 2	0.552
	CRR073305	Juvenile bud 3	2.436
	CRR073306	Third green 1	0.014
	CRR073307	Third green 2	0.032
	CRR073308	Third green 3	0.057
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.019
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.070
	CRR073314	Silver flowering 3	0.082
	CRR073315	Gold flowering 1	2.196
	CRR073316	Gold flowering 2	3.945
	CRR073317	Gold flowering 3	1.311
	CRR073318	Tawny withering 1	0.556
	CRR073319	Tawny withering 2	0.949
	CRR073320	Tawny withering 3	0.967