Detail information of GWHGAAZE013019


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262835.12.80016E-66PREDICTED: high mobility group B protein 1-like [Nelumbo nucifera]
Swissprottr|O49595|HMGB1_ARATH5E-52High mobility group B protein 1
trEMBLtr|W9S2V0|W9S2V0_9ROSA9E-60Uncharacterized protein {ECO:0000313|EMBL:EXC23661.1}
TAIR10AT3G51880.22E-28high mobility group B1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9542263795424306-
GWHAAZE00000003mRNA9542263795424306-
GWHAAZE00000003exon9542263795422729-
GWHAAZE00000003exon9542307495423153-
GWHAAZE00000003exon9542357295423668-
GWHAAZE00000003exon9542379195423848-
GWHAAZE00000003exon9542395095424075-
GWHAAZE00000003exon9542423695424306-
GWHAAZE00000003CDS9542423695424306-
GWHAAZE00000003CDS9542395095424075-
GWHAAZE00000003CDS9542379195423848-
GWHAAZE00000003CDS9542357295423668-
GWHAAZE00000003CDS9542307495423153-
GWHAAZE00000003CDS9542263795422729-
Transcript Sequence

Network for GWHGAAZE013019

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.20HMG_box551002.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf232.160
SRR3591706second leaf216.457
SRR3591707mature leaf264.027
SRR3591708Shoot apex192.632
SRR3591709Stem234.248
SRR3591710White floral bud151.632
SRR3591711White flower176.491
SRR3591712Green floral bud144.122
SRR3591713Yellow flower94.730
SRP173429 SRR8316895Juvenile bud stage 154.191
SRR8316896Juvenile bud stage 172.726
SRR8316897Juvenile bud stage 100.215
SRR8316894Third green stage 97.238
SRR8316900Third green stage 230.481
SRR8316901Third green stage 255.219
SRR8316898Complete white stage 129.847
SRR8316899Complete white stage 396.647
SRR8316903Complete white stage 246.527
SRR8316902Silver flowering stage122.242
SRR8316904Silver flowering stage133.920
SRR8316905Silver flowering stage90.377
SRR8316906Gold flowering stage 185.370
SRR8316907Gold flowering stage 193.127
SRR8316908Gold flowering stage 206.864
SRP132670SRR6706286Control358.923
SRR6706287Light intensity 50%348.227
SRR6706288Light intensity 20%380.275
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1193.423
CNS0095593Slightly white alabastrum(diploid) 2215.462
CNS0095594Slightly white alabastrum(diploid) 3156.765
CNS0095595Whole white alabastrum(diploid) 2168.650
CNS0095596Whole white alabastrum(diploid) 3164.318
CNS0095597Whole white alabastrum(diploid) 4174.097
CNS0095598Silvery flower (diploied) 1254.240
CNS0095599Silvery flower (diploied) 2219.361
CNS0095600Silvery flower (diploied) 3207.525
CNS0095601Golden flower (diploid) 1218.451
CNS0095602Golden flower (diploid) 2157.677
CNS0095603Golden flower (diploid) 3162.418
CNS0095604Slightly white alabastrum(tetraploid) 1135.522
CNS0095605Slightly white alabastrum(tetraploid) 2135.738
CNS0095606Slightly white alabastrum(tetraploid) 3219.035
CNS0095607Whole white alabastrum(tetraploid) 185.534
CNS0095608Whole white alabastrum(tetraploid) 274.545
CNS0095609Whole white alabastrum(tetraploid) 3141.294
CNS0095610Silvery flower (diploied) 1153.808
CNS0095611Silvery flower (diploied) 2137.095
CNS0095612Silvery flower (diploied) 382.919
CNS0095613Golden flower (tetraploid) 1101.352
CNS0095614Golden flower (tetraploid) 2106.155
CNS0095615Golden flower (tetraploid) 395.007
CRA001975CRR073297Stem 1160.098
CRR073298Stem 2167.873
CRR073299Stem 3162.662
CRR073300Leaf 1207.784
CRR073301Leaf 2225.712
CRR073302Leaf 3167.856
CRR073303Juvenile bud 1216.040
CRR073304Juvenile bud 2175.512
CRR073305Juvenile bud 3175.360
CRR073306Third green 1110.612
CRR073307Third green 2100.590
CRR073308Third green 391.277
CRR073309Second white 155.459
CRR073310Second white 261.898
CRR073311Second white 336.440
CRR073312Silver flowering 115.824
CRR073313Silver flowering 218.886
CRR073314Silver flowering 312.239
CRR073315Gold flowering 1156.862
CRR073316Gold flowering 2156.327
CRR073317Gold flowering 390.346
CRR073318Tawny withering 1144.057
CRR073319Tawny withering 2156.511
CRR073320Tawny withering 3160.849