Gene detail

Detail information of GWHGAAZE013022

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009612243.1	0	PREDICTED: putative serine/threonine-protein kinase {ECO:0000250\|UniProtKB:Q9FE20, ECO:0000303\|Ref.2} [Nicotiana tomentosiformis]
Swissprot	tr\|C0LGH2\|Y1561_ARATH	1E-99	Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (Precursor)
trEMBL	tr\|M1AFU8\|M1AFU8_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400021885}
TAIR10	AT3G09010.1	2E-133	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95452388	95459359	+
GWHAAZE00000003	mRNA	95452388	95459359	+
GWHAAZE00000003	exon	95452388	95452469	+
GWHAAZE00000003	exon	95452838	95452986	+
GWHAAZE00000003	exon	95453271	95453385	+
GWHAAZE00000003	exon	95454151	95454263	+
GWHAAZE00000003	exon	95454630	95454840	+
GWHAAZE00000003	exon	95455741	95455978	+
GWHAAZE00000003	exon	95457606	95457756	+
GWHAAZE00000003	exon	95458850	95459359	+
GWHAAZE00000003	CDS	95452388	95452469	+
GWHAAZE00000003	CDS	95452838	95452986	+
GWHAAZE00000003	CDS	95453271	95453385	+
GWHAAZE00000003	CDS	95454151	95454263	+
GWHAAZE00000003	CDS	95454630	95454840	+
GWHAAZE00000003	CDS	95455741	95455978	+
GWHAAZE00000003	CDS	95457606	95457756	+
GWHAAZE00000003	CDS	95458850	95459209	+
GWHAAZE00000003	three_prime_UTR	95459210	95459359	+

Transcript Sequence
>GWHTAAZE013036 ATGAGCTCCCGTGAAAGTGTGAAAAAGGTTTCAAAGGCTTTCAGCCCCACCCACATTTTCCCACCAGTAGAAAGAAAGAAAAGGGAATTACTGGATTGGGTTGAAGAAGAGGTGGAGATTAGGATTTTAATTTTTTTTCTCTCAAATGTGTATGTTTATGCAAAGAAGCCATGGCCTTCAACTGTTTTCGTGCATTTGATTTGTGTAAAGAAAGCGGAACACAAACAGAAGGCTGGAGGCAGATTATTACTTTTTGTTCTTAGGATGTCTACTTTCTTCCTCTTTGGTTTAGGATATAAAGGGTTGAACATTTGGGCAATTCTGGATTTGGAAATGGCTCCATGGAAGATTGCTACAGCCAATGTAAGGCTGTTTTCCTATAATTCATTGAGGTCAGCTACAAGGAACTTCCATCCATCAAGCAGAATAGGTGGTGGTGGTTTTGGAGTTGTGTATAGGGGGTTTTTGAGAGATGGTACTTGTGTTGCCATAAAGTCTCTTTCCGTTGAGTCAAAACAAGGGACCAATGAATTCTTGACGGAGATTAATGTGATATCGAATATCAGTCATCCAAACCTTGTCCAATTGATTGGTTGTTGTGTTGAGGGCCGTAACCGTATCTTGGTATATGAATACATGGAGAACAGCAGCCTATCTAGTGCTTTACTTGGTTCAAAAGGTAAACGCGTTGACCTGGATTGGCAACAGAGGGCTGCTATTTGCATGGGTACAGCTGCAGGTCTTGCATTTCTTCACGAGGAAGCTGAACCGCATGTTGTACACCGAGATATAAAGGCCAGTAATATACTTCTTGGTGAAAACTTTCATCCAAAAATTGGAGATTTTGGGCTAGCAAAACTTTTTCCAGACAATGTCACTCATGTTAGTACCCGAGTAGCTGGAACAGTGGGATACCTAGCTCCTGAATATGCCTTGTTAGGACAACTTACAAAGAAGGCGGATGTATATAGTTTTGGGGTTCTTATACTTGAAATCATAAGTGGCAGAAGTAGTAGTAAGTCAGCGTTTGGTGAGGATCTCTTGGTTCTGGTTGAATGGTCATGGAAGCTGAGAAAAGAAGAGAGGATTCTAGACATTGTTGATCCAGATCTAACCGAATATCCGAAGGCCGAGGTTACTCGCTTCATTAAAGTTGCTCTTTTCTGCACCCAATCAGCTTCTAACAAGAGGCCCCACATGAAGCAGGTAATGGAGATGCTCTCGAAGGAGGTCAACCTCAACGACAAGTTGTTAACGGAACCTGGGATTTATAGACCGCACAGCTCTGGGCGATCTGACGATGGTAGTTGGAACACATCCTCATCCAAAGGAAACAAATGCAAGAAATCAGTAAATCCTTCTGTAAGTTCATCCCAGTTTTTTAGTTCTCACAGTATTACACAGATGCTTCCTAGATGAATTCATATATATGCATATACACATTCATTTGTGATTCTATTAGATCTCTCTAAATTGGCAATTGAGGACCTTTTAATTGACCCTTTTCCATCATTATTCTTGGTAAAACTTGTAACGCAGACCAGCTTATTTGTGGCTATTATATCTTCC

Network for GWHGAAZE013022

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	141	407	5.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.988
	SRR3591706	second leaf	7.049
	SRR3591707	mature leaf	2.220
	SRR3591708	Shoot apex	4.471
	SRR3591709	Stem	5.471
	SRR3591710	White floral bud	2.985
	SRR3591711	White flower	1.242
	SRR3591712	Green floral bud	6.458
	SRR3591713	Yellow flower	0.992
SRP173429	SRR8316895	Juvenile bud stage	1.357
	SRR8316896	Juvenile bud stage	1.866
	SRR8316897	Juvenile bud stage	0.303
	SRR8316894	Third green stage	0.640
	SRR8316900	Third green stage	2.729
	SRR8316901	Third green stage	2.246
	SRR8316898	Complete white stage	1.508
	SRR8316899	Complete white stage	3.705
	SRR8316903	Complete white stage	0.889
	SRR8316902	Silver flowering stage	0.428
	SRR8316904	Silver flowering stage	0.587
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.184
	SRR8316907	Gold flowering stage	0.337
	SRR8316908	Gold flowering stage	0.528
SRP132670	SRR6706286	Control	1.071
	SRR6706287	Light intensity 50%	0.991
	SRR6706288	Light intensity 20%	1.549
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.755
	CNS0095593	Slightly white alabastrum(diploid) 2	2.410
	CNS0095594	Slightly white alabastrum(diploid) 3	2.560
	CNS0095595	Whole white alabastrum(diploid) 2	1.165
	CNS0095596	Whole white alabastrum(diploid) 3	1.994
	CNS0095597	Whole white alabastrum(diploid) 4	2.000
	CNS0095598	Silvery flower (diploied) 1	0.624
	CNS0095599	Silvery flower (diploied) 2	0.842
	CNS0095600	Silvery flower (diploied) 3	0.425
	CNS0095601	Golden flower (diploid) 1	0.558
	CNS0095602	Golden flower (diploid) 2	0.142
	CNS0095603	Golden flower (diploid) 3	0.359
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.542
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.547
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.673
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.762
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.376
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.126
	CNS0095610	Silvery flower (diploied) 1	0.090
	CNS0095611	Silvery flower (diploied) 2	0.025
	CNS0095612	Silvery flower (diploied) 3	0.087
	CNS0095613	Golden flower (tetraploid) 1	0.028
	CNS0095614	Golden flower (tetraploid) 2	0.356
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	1.339
	CRR073298	Stem 2	1.130
	CRR073299	Stem 3	0.612
	CRR073300	Leaf 1	1.194
	CRR073301	Leaf 2	2.219
	CRR073302	Leaf 3	0.901
	CRR073303	Juvenile bud 1	0.808
	CRR073304	Juvenile bud 2	1.186
	CRR073305	Juvenile bud 3	0.872
	CRR073306	Third green 1	0.081
	CRR073307	Third green 2	0.184
	CRR073308	Third green 3	0.362
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.928
	CRR073316	Gold flowering 2	0.792
	CRR073317	Gold flowering 3	0.398
	CRR073318	Tawny withering 1	2.241
	CRR073319	Tawny withering 2	1.688
	CRR073320	Tawny withering 3	1.765