Gene detail

Detail information of GWHGAAZE013037

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACF17633.1	0	putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Capsicum annuum]
Swissprot	tr\|Q9LD43\|ACCA_ARATH	0	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|B5LAS6\|B5LAS6_CAPAN	0	Putative acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit {ECO:0000313\|EMBL:ACF17633.1}
TAIR10	AT2G38040.2	6E-163	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	95738456	95748019	-
GWHAAZE00000003	mRNA	95738456	95748019	-
GWHAAZE00000003	exon	95738456	95739727	-
GWHAAZE00000003	exon	95740498	95740575	-
GWHAAZE00000003	exon	95742137	95742205	-
GWHAAZE00000003	exon	95742285	95742336	-
GWHAAZE00000003	exon	95743221	95743375	-
GWHAAZE00000003	exon	95743465	95743579	-
GWHAAZE00000003	exon	95744163	95744560	-
GWHAAZE00000003	exon	95747375	95747449	-
GWHAAZE00000003	exon	95747542	95747917	-
GWHAAZE00000003	exon	95748009	95748019	-
GWHAAZE00000003	CDS	95748009	95748019	-
GWHAAZE00000003	CDS	95747542	95747917	-
GWHAAZE00000003	CDS	95747375	95747449	-
GWHAAZE00000003	CDS	95744163	95744560	-
GWHAAZE00000003	CDS	95743465	95743579	-
GWHAAZE00000003	CDS	95743221	95743375	-
GWHAAZE00000003	CDS	95742285	95742336	-
GWHAAZE00000003	CDS	95742137	95742205	-
GWHAAZE00000003	CDS	95740498	95740575	-
GWHAAZE00000003	CDS	95738456	95739727	-

Transcript Sequence
>GWHTAAZE013051 ATGAGGAAACGGTTGAGAATTTGGAGTAGTGACTCCTGGATTTGGAGAATGGCTTCGATGTTGCATTCTCCAGCTACTTTTGCTGGGAAGTTGGCATGTGGATCTTCAGCATCGGATCTACTCCAAAGCTCGAGTAGTGTAGTCAGTGGTGTGCCATTGAAAGGCATAGGGAGAGCGCGATTTGGCACAAGTAAGAGGGACTTTACGGTCTCGGCGAAGACAAGGAAGGCCAGGAAGCGTTACTGGTGGCCTGAGGATCCCGATCCGAATGTGAAGGGTGGAATTTTTCGTCATCTTTCATCGTTCCCGCCTTTGAAAGAGAAGCCCAAGCCAGTTACTCTGGAGTTTGAGAAACCTCTAATGGTTATCCAAAAGAAACTGTTTGATATACAAAAGTTGGCAAATGAAACTGGTCTGGACTTCAGTGATCAAATTATGGCTCTAGAAAACAATTATCAACAGCTCATTTCACTCACGTCTTTGCAATATGTTTTTCAGGCTCTAAGAAATCTCTACACGAATCTTACTCCCTTTCAGCGACTGCAAATTGCACGGCACCCAAACAGGCCAACTTTCCTTGACCATGTTTTTAATATTACTGAGACGGTCTGTTTCTTTCTCAATCTCTCTCTCTCTCTCTCTCTTCCCGTAAGGATGGTACTGGTATCTCAGACTAAGCTGTTGTATTTCATTGTCCAGTTTATAGAGCTTCATGGCGATCGAGCAGGGTATGATGATCCTGCAATTGTCACTGGTCTTGGGACGATGAATGGCAAAACCTACATGCTCATAGGTCATCAGAAAGGAAGAAATACGAAGGAGAACATTATGCGCAACTTTGGGATGCCTACTCCACATGGCTACCGGAAGGCTCTACGCTTGATGAAGTATGCTGATCACCATGGATTCCCCATTGTTACTTTTATTGACACTCCAGGGGCATATGCAGACCTTAAATCAGAGGAGCTAGGCCAAGGTGAAGCCATAGCTCAGAACTTGAGAAGTATGTTTGGTTTGAAGGTACCAGTTATTTCCATTGTTATTGGAGAAGGTGGATCTGGTGGTGCTCTGGCCATTGGCTGTGGAAATAAATTGTTAATGCTTGAAAATTCAGTCTTCTATGTCGCCAGCCCTGAAGCATGTGCTGCAATCTTGTGGAAAAGTTCCAAAGAAGCTCCTAAGGCAGCTGAGAAGCTTAAGATAACAGCTAAAGAGTTATGCAAGCTGCAAATTGCTGACAGTATCATTCCTGAACCACTTGGTGGTGCTCATACAGATCCAGAGTGGACCTCGGAGCAGATAAAAACTGCAATTCTTGAAGCGATGGATGAGCTTGGAGAGATGGAGATCCCAGACCTTCTACAACATCGTCATCAAAAATTCCGAAAAATTGGTGGGTTCCAAGAAGTTGAGCCGATAGGTCCAAAAATAAATTATAACTCGAAAGACAGAGCAAATCCAATTATTGAAAAACCGGTTGGAGAGTCTTCAAAGCTGGATTTGAAAGTCGATTATAAAAAATGCACACTAAAGCTTCCAAATGCTGAATCATTGTGCAAGTGTGTTCCAGGCTTAGCTGCAAAAGTTCAGCTTCTCGGATACTTGATGATGGTAAAAGATTTAGAAAAGGCAATCATTCTCGAATCTTCCGAGGCCGCTGCAATGGGCTTCAATGACAAAATCGCAAAATTGCGTGAAGAATATGAAAGAAAAAGGAACTCAGGCATTCCTCCTGCTCTAGAACAAAAGCTCAATGAGCTTACTTATGAATTCTGGGAAATGCTTTCCGGGTCTCCTAATTTTAAAAGCCTGGAATCTAAGATTAACATGCTGAGGGATCTGGCCAACAATGAGAACATAAAGAAAACGGGTGGATTTATGCAGGAAGTCACCGAGAAAGTTGGGGAGGTTCTAAATAGACCCGATATGAAGAAGAAACGAGAGGAAGTGGAGTCATTAATGAAAAAATTGAGGGTAACGGATTTGAATTCCGAGAAATTAGACCAAGGTCTTGAGGACAAAATTGGTCAACTCGATCAGCAGTTAGCTACAGAAACTAATTATCTTATTCCCTATCACGTTTTGATAGAATTGTTGAAGGGGACACCAGAAGGCAAGTTTGGCAAAGAGACCGGAGCATTTTACAAGGGATACCTTGAGAAATACAACGCGATAATTAACCAACCCGGTAAAGAAAAGAAATCGGGCCACCAGATTAATGAGGAAATCTCCGATATTTTTTACTCCCTCGGTTTGCGTGCATTGTTGAAGAAAGTAAGGGGTGATAGAGAGGCAAGTGAATTGATTAGCGAACTCACCCAGAAGTTTGAAGCGATTCTAAATAGGCCCGATATAAGGAAGAAGAATGAATTCCTCTATCAATTTAACAAAATGGGGTCGGCTCGGTCAAAGGAATTGGATTCTGAGATGAAGGAGAAACTTGTGAAAGCAGAGAAAGCTATAGTTGCCGAATTTGCTAAAGTTCTTAACTTGCTTGGTTTGGGTGAATTGTTGGACGAGAAATTGGATGTCGAGCAACTTTTGAAGGATGATAAAGAGTTTAAAAATGGCTCTGTTATAAAGGAGAAGATTGCCATCTGA

Network for GWHGAAZE013037

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03255.15	ACCA	114	202	4.50E-11
PF03255.15	ACCA	231	299	5.00E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01962	accA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0003989	molecular_function	acetyl-CoA carboxylase activity
GO:0016874	molecular_function	ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.602
	SRR3591706	second leaf	75.789
	SRR3591707	mature leaf	38.754
	SRR3591708	Shoot apex	68.605
	SRR3591709	Stem	36.853
	SRR3591710	White floral bud	49.162
	SRR3591711	White flower	62.018
	SRR3591712	Green floral bud	81.710
	SRR3591713	Yellow flower	56.418
SRP173429	SRR8316895	Juvenile bud stage	59.256
	SRR8316896	Juvenile bud stage	84.511
	SRR8316897	Juvenile bud stage	38.647
	SRR8316894	Third green stage	32.840
	SRR8316900	Third green stage	113.817
	SRR8316901	Third green stage	91.321
	SRR8316898	Complete white stage	29.801
	SRR8316899	Complete white stage	81.109
	SRR8316903	Complete white stage	55.363
	SRR8316902	Silver flowering stage	31.878
	SRR8316904	Silver flowering stage	50.029
	SRR8316905	Silver flowering stage	23.792
	SRR8316906	Gold flowering stage	69.547
	SRR8316907	Gold flowering stage	68.570
	SRR8316908	Gold flowering stage	78.550
SRP132670	SRR6706286	Control	49.770
	SRR6706287	Light intensity 50%	57.331
	SRR6706288	Light intensity 20%	64.823
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.307
	CNS0095593	Slightly white alabastrum(diploid) 2	47.383
	CNS0095594	Slightly white alabastrum(diploid) 3	53.437
	CNS0095595	Whole white alabastrum(diploid) 2	47.741
	CNS0095596	Whole white alabastrum(diploid) 3	44.461
	CNS0095597	Whole white alabastrum(diploid) 4	35.642
	CNS0095598	Silvery flower (diploied) 1	38.000
	CNS0095599	Silvery flower (diploied) 2	37.404
	CNS0095600	Silvery flower (diploied) 3	78.773
	CNS0095601	Golden flower (diploid) 1	33.675
	CNS0095602	Golden flower (diploid) 2	77.232
	CNS0095603	Golden flower (diploid) 3	76.216
	CNS0095604	Slightly white alabastrum(tetraploid) 1	72.584
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.427
	CNS0095606	Slightly white alabastrum(tetraploid) 3	125.552
	CNS0095607	Whole white alabastrum(tetraploid) 1	40.931
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.857
	CNS0095609	Whole white alabastrum(tetraploid) 3	110.928
	CNS0095610	Silvery flower (diploied) 1	94.430
	CNS0095611	Silvery flower (diploied) 2	91.778
	CNS0095612	Silvery flower (diploied) 3	76.175
	CNS0095613	Golden flower (tetraploid) 1	54.870
	CNS0095614	Golden flower (tetraploid) 2	90.891
	CNS0095615	Golden flower (tetraploid) 3	68.802
CRA001975	CRR073297	Stem 1	77.131
	CRR073298	Stem 2	71.181
	CRR073299	Stem 3	56.252
	CRR073300	Leaf 1	81.392
	CRR073301	Leaf 2	68.311
	CRR073302	Leaf 3	69.343
	CRR073303	Juvenile bud 1	59.024
	CRR073304	Juvenile bud 2	62.283
	CRR073305	Juvenile bud 3	56.259
	CRR073306	Third green 1	32.525
	CRR073307	Third green 2	24.226
	CRR073308	Third green 3	31.074
	CRR073309	Second white 1	27.603
	CRR073310	Second white 2	35.469
	CRR073311	Second white 3	36.504
	CRR073312	Silver flowering 1	31.796
	CRR073313	Silver flowering 2	36.080
	CRR073314	Silver flowering 3	33.391
	CRR073315	Gold flowering 1	40.279
	CRR073316	Gold flowering 2	80.259
	CRR073317	Gold flowering 3	38.441
	CRR073318	Tawny withering 1	39.481
	CRR073319	Tawny withering 2	27.135
	CRR073320	Tawny withering 3	44.438