Gene detail

Detail information of GWHGAAZE013065

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529855.1	1.6677E-130	bel1 homeotic protein, putative [Ricinus communis]
Swissprot	tr\|Q9LZM8\|BLH9_ARATH	3E-82	BEL1-like homeodomain protein 9
trEMBL	tr\|B9SV36\|B9SV36_RICCO	6E-131	Bel1 homeotic protein, putative {ECO:0000313\|EMBL:EEF32505.1}
TAIR10	AT5G02030.1	2E-54	POX (plant homeobox) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96193435	96195882	+
GWHAAZE00000003	mRNA	96193435	96195882	+
GWHAAZE00000003	exon	96193435	96193790	+
GWHAAZE00000003	exon	96194477	96194537	+
GWHAAZE00000003	exon	96195382	96195882	+
GWHAAZE00000003	CDS	96193435	96193790	+
GWHAAZE00000003	CDS	96194477	96194537	+
GWHAAZE00000003	CDS	96195382	96195882	+

Transcript Sequence
>GWHTAAZE013079 ATGCATAAGGTGTACAGGAAGTACAAGCAGTACTACCAGCAGGTGCAAGCAGTCGTAGCATCATTTGAAACCGTGGCCGGTCTAAGCAGCACAGCTCCATTCGCAAACTTGGCTCTAAAAGCCATGTCCAAACACTTCTGGTGCTTGAAGAATGCCATAACTGACCAGCTTCAGTTTGCAACCAAATTTCATGCTCATACAAACTACGCAAATGAAGAAACGCCTCTTTATGGCCAAAGGATGATGCAAAACTTGGGATTTACCGATCATCAACCTGTTTGGCGGCCCCAAAGGGGACTCCCGGAACGCGCCGTTACAGTGCTCAGGGCATGGTTGTTTGAACACTTTTTGCACCCTTATCCTACGGATACAGATAAATTGTTGTTGGCTAAGCAGACTGGTCTGTCCCGGAATCAGGTATCTAACTGGTTCATCAATGCGAGAGTACGGCTTTGGAAGCCAATGGTGGAAGAAATGCACACACTTGAAACACGGCAAGCTGAAAAACCTTCACAAGATCATCAAAATGCGAATCAAACAAACACTCATTTCACTGAAAATCCGCCAACCTCCATGCAAAGGAAAAATCAAAACCTAGAAGACCTCCCATCAAAACGGACCAGAAACAATGACTTCCCTCACAACCCTATTGTCACCGAGGAGCGCATGAACTTTTTATACAACCCTTCCTCCCAGAACCCTATTGGCACCGGAATGAGCAGTAGTATAGGTACAAGCGGCGGCGTTTCATTAACACTGGGCCTCCACCAGAACAACGGTGGGGTTGTTTTATTGGAGCCCTTCCCGATGAATGCGGCTCGCCGGCTCGGTCTCGACTTGAGTACTGAGGGGTTTGTGATGGGTGGTTTCGGAAGAGATGTGTCTGGAAGGCAGCTTTTGCATGATTTTGTTGGGTAA

Network for GWHGAAZE013065

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07526.12	POX	2	54	2.20E-20
PF05920.12	Homeobox_KN	111	150	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-BELL

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.273
	SRR3591706	second leaf	22.681
	SRR3591707	mature leaf	20.552
	SRR3591708	Shoot apex	31.466
	SRR3591709	Stem	18.725
	SRR3591710	White floral bud	10.820
	SRR3591711	White flower	7.863
	SRR3591712	Green floral bud	17.877
	SRR3591713	Yellow flower	5.262
SRP173429	SRR8316895	Juvenile bud stage	9.253
	SRR8316896	Juvenile bud stage	10.759
	SRR8316897	Juvenile bud stage	4.609
	SRR8316894	Third green stage	5.373
	SRR8316900	Third green stage	21.770
	SRR8316901	Third green stage	20.076
	SRR8316898	Complete white stage	5.063
	SRR8316899	Complete white stage	27.809
	SRR8316903	Complete white stage	7.664
	SRR8316902	Silver flowering stage	1.234
	SRR8316904	Silver flowering stage	1.821
	SRR8316905	Silver flowering stage	0.490
	SRR8316906	Gold flowering stage	1.248
	SRR8316907	Gold flowering stage	1.115
	SRR8316908	Gold flowering stage	0.429
SRP132670	SRR6706286	Control	23.623
	SRR6706287	Light intensity 50%	23.543
	SRR6706288	Light intensity 20%	24.638
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.189
	CNS0095593	Slightly white alabastrum(diploid) 2	17.563
	CNS0095594	Slightly white alabastrum(diploid) 3	9.356
	CNS0095595	Whole white alabastrum(diploid) 2	13.194
	CNS0095596	Whole white alabastrum(diploid) 3	13.029
	CNS0095597	Whole white alabastrum(diploid) 4	12.233
	CNS0095598	Silvery flower (diploied) 1	11.405
	CNS0095599	Silvery flower (diploied) 2	9.903
	CNS0095600	Silvery flower (diploied) 3	12.345
	CNS0095601	Golden flower (diploid) 1	11.481
	CNS0095602	Golden flower (diploid) 2	9.884
	CNS0095603	Golden flower (diploid) 3	8.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.802
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.538
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.177
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.911
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.708
	CNS0095610	Silvery flower (diploied) 1	13.879
	CNS0095611	Silvery flower (diploied) 2	22.494
	CNS0095612	Silvery flower (diploied) 3	3.313
	CNS0095613	Golden flower (tetraploid) 1	4.774
	CNS0095614	Golden flower (tetraploid) 2	7.768
	CNS0095615	Golden flower (tetraploid) 3	1.564
CRA001975	CRR073297	Stem 1	32.782
	CRR073298	Stem 2	27.709
	CRR073299	Stem 3	36.394
	CRR073300	Leaf 1	36.993
	CRR073301	Leaf 2	35.291
	CRR073302	Leaf 3	30.817
	CRR073303	Juvenile bud 1	40.628
	CRR073304	Juvenile bud 2	30.295
	CRR073305	Juvenile bud 3	42.129
	CRR073306	Third green 1	1.573
	CRR073307	Third green 2	3.292
	CRR073308	Third green 3	2.427
	CRR073309	Second white 1	0.177
	CRR073310	Second white 2	0.316
	CRR073311	Second white 3	0.466
	CRR073312	Silver flowering 1	0.090
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	24.375
	CRR073316	Gold flowering 2	41.584
	CRR073317	Gold flowering 3	23.019
	CRR073318	Tawny withering 1	26.912
	CRR073319	Tawny withering 2	44.215
	CRR073320	Tawny withering 3	32.898