Gene detail

Detail information of GWHGAAZE013078

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654244.1	4.4739E-126	PREDICTED: tropinone reductase homolog [Vitis vinifera]
Swissprot	tr\|P50165\|TRNH_DATST	1E-110	Tropinone reductase homolog
trEMBL	tr\|B9T429\|B9T429_RICCO	3E-124	Tropinone reductase, putative {ECO:0000313\|EMBL:EEF29390.1}
TAIR10	AT5G06060.1	1E-80	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96415944	96417490	+
GWHAAZE00000003	mRNA	96415944	96417490	+
GWHAAZE00000003	exon	96415944	96416032	+
GWHAAZE00000003	exon	96416454	96416661	+
GWHAAZE00000003	exon	96416772	96416988	+
GWHAAZE00000003	exon	96417073	96417179	+
GWHAAZE00000003	exon	96417299	96417490	+
GWHAAZE00000003	CDS	96415944	96416032	+
GWHAAZE00000003	CDS	96416454	96416661	+
GWHAAZE00000003	CDS	96416772	96416988	+
GWHAAZE00000003	CDS	96417073	96417179	+
GWHAAZE00000003	CDS	96417299	96417490	+

Transcript Sequence
>GWHTAAZE013092 ATGGAACATAACGAGCTTAGCTGCAGAGATCAGAGGTGGTCTCTTAAGGGTACAACTGCTCTCGTCACCGGTGGTACTAAAGGAATTGGATATGCAATAGTGGAGGAATTGGCTGGATTTGGTGCATCAGTATATACATGTTCAAGAAACCAAGAAGAGCTTAATGAGAAATTAAAAGAATGGGAAAAGAAGGGATTCAAGGTAGGTGGTTCTCTTTGTGACCTGTCTTCAAGGGAACAAAGAGAGAAGCTGATGAAGGATGTTACTTCTGTCTTTGATGGAAAGCTCAATATTTTCATAAATAATGCGGCATCAGTTCAAATGAAACGAGTAACCGAAGCTACTGTCGAGGATTACTCCTCTGTATTTGCAACCAACTTCGAGGGTCCGTATCATCTGTGCCAACTTGCGCATCCCCTCCTGAAAGAATCCAGGGCAGGCAGCATTGTCTTTGTTTCTTCGTTGGCTGGTGTAACCGCGCTACCTGCACTTTCAATTTATGGGGCTTCTAAAGCTGCAATCAATCAACTTACAAAGAATTTGGCATGCGAATGGGCATGCGATAATATTCGGACCAATGCTGTGGCACCTTGGGCTGTACATACCTCGGTTTCAAATCCTACAACTGATATGTCAATTCGAACTATAATGGGACAAGCATTGGCTCGAACTCCTCTCCGCCCAATAGCACAACCTAATGAGATATCGTCGTTGGTAGCCTTTCTTTGCCTTCCAGCAGCTTCTTTCATCACAGGACAAGTTATTGTTGTTGATGCTGGTTATACCGCTGGTGGTTTCAAGCTCACTTCTTAA

Network for GWHGAAZE013078

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0216	CYTOCHROME_P549_Family CYTOCHROME_P549_Family map00960 Tropane, piperidine and pyridine alkaloid biosynthesis

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13561.7	adh_short_C2	26	262	3.80E-56

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08081	TR1	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

GO term	Ontology	Name
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.080
	SRR3591706	second leaf	8.847
	SRR3591707	mature leaf	5.367
	SRR3591708	Shoot apex	4.914
	SRR3591709	Stem	17.094
	SRR3591710	White floral bud	8.242
	SRR3591711	White flower	9.149
	SRR3591712	Green floral bud	10.014
	SRR3591713	Yellow flower	84.728
SRP173429	SRR8316895	Juvenile bud stage	22.362
	SRR8316896	Juvenile bud stage	36.043
	SRR8316897	Juvenile bud stage	8.086
	SRR8316894	Third green stage	7.839
	SRR8316900	Third green stage	25.216
	SRR8316901	Third green stage	22.341
	SRR8316898	Complete white stage	6.627
	SRR8316899	Complete white stage	18.866
	SRR8316903	Complete white stage	9.232
	SRR8316902	Silver flowering stage	8.280
	SRR8316904	Silver flowering stage	14.287
	SRR8316905	Silver flowering stage	6.118
	SRR8316906	Gold flowering stage	118.242
	SRR8316907	Gold flowering stage	50.535
	SRR8316908	Gold flowering stage	133.424
SRP132670	SRR6706286	Control	28.296
	SRR6706287	Light intensity 50%	26.791
	SRR6706288	Light intensity 20%	24.165
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.686
	CNS0095593	Slightly white alabastrum(diploid) 2	16.615
	CNS0095594	Slightly white alabastrum(diploid) 3	64.700
	CNS0095595	Whole white alabastrum(diploid) 2	12.601
	CNS0095596	Whole white alabastrum(diploid) 3	17.723
	CNS0095597	Whole white alabastrum(diploid) 4	16.740
	CNS0095598	Silvery flower (diploied) 1	52.042
	CNS0095599	Silvery flower (diploied) 2	52.715
	CNS0095600	Silvery flower (diploied) 3	102.155
	CNS0095601	Golden flower (diploid) 1	49.467
	CNS0095602	Golden flower (diploid) 2	149.155
	CNS0095603	Golden flower (diploid) 3	147.779
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.328
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.579
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.200
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.443
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.556
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.520
	CNS0095610	Silvery flower (diploied) 1	127.925
	CNS0095611	Silvery flower (diploied) 2	106.798
	CNS0095612	Silvery flower (diploied) 3	42.273
	CNS0095613	Golden flower (tetraploid) 1	307.663
	CNS0095614	Golden flower (tetraploid) 2	258.338
	CNS0095615	Golden flower (tetraploid) 3	98.189
CRA001975	CRR073297	Stem 1	41.734
	CRR073298	Stem 2	28.520
	CRR073299	Stem 3	28.388
	CRR073300	Leaf 1	14.170
	CRR073301	Leaf 2	10.765
	CRR073302	Leaf 3	17.426
	CRR073303	Juvenile bud 1	9.980
	CRR073304	Juvenile bud 2	6.093
	CRR073305	Juvenile bud 3	14.175
	CRR073306	Third green 1	3.854
	CRR073307	Third green 2	2.589
	CRR073308	Third green 3	2.061
	CRR073309	Second white 1	5.717
	CRR073310	Second white 2	9.355
	CRR073311	Second white 3	6.370
	CRR073312	Silver flowering 1	53.253
	CRR073313	Silver flowering 2	41.106
	CRR073314	Silver flowering 3	42.312
	CRR073315	Gold flowering 1	34.542
	CRR073316	Gold flowering 2	44.141
	CRR073317	Gold flowering 3	35.077
	CRR073318	Tawny withering 1	52.734
	CRR073319	Tawny withering 2	59.221
	CRR073320	Tawny withering 3	20.761