Detail information of GWHGAAZE013101


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010654283.10PREDICTED: uncharacterized protein LOC100245881 [Vitis vinifera]
trEMBLtr|A0A068UDP7|A0A068UDP7_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06611.1}
TAIR10AT5G02310.10proteolysis 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9675018296776360+
GWHAAZE00000003mRNA9675018296776360+
GWHAAZE00000003exon9675018296750253+
GWHAAZE00000003exon9675296396754060+
GWHAAZE00000003exon9676035296761538+
GWHAAZE00000003exon9676193596762075+
GWHAAZE00000003exon9676308496763327+
GWHAAZE00000003exon9676398296764707+
GWHAAZE00000003exon9676581596765939+
GWHAAZE00000003exon9676639096767127+
GWHAAZE00000003exon9676791496767965+
GWHAAZE00000003exon9676807696768673+
GWHAAZE00000003exon9676949096769698+
GWHAAZE00000003exon9677048796771025+
GWHAAZE00000003exon9677264696772784+
GWHAAZE00000003exon9677288996772966+
GWHAAZE00000003exon9677361596773683+
GWHAAZE00000003exon9677404596774150+
GWHAAZE00000003exon9677430396774450+
GWHAAZE00000003exon9677618596776360+
GWHAAZE00000003CDS9675018296750253+
GWHAAZE00000003CDS9675296396754060+
GWHAAZE00000003CDS9676035296761538+
GWHAAZE00000003CDS9676193596762075+
GWHAAZE00000003CDS9676308496763327+
GWHAAZE00000003CDS9676398296764707+
GWHAAZE00000003CDS9676581596765939+
GWHAAZE00000003CDS9676639096767127+
GWHAAZE00000003CDS9676791496767965+
GWHAAZE00000003CDS9676807696768673+
GWHAAZE00000003CDS9676949096769698+
GWHAAZE00000003CDS9677048796771025+
GWHAAZE00000003CDS9677264696772784+
GWHAAZE00000003CDS9677288996772966+
GWHAAZE00000003CDS9677361596773683+
GWHAAZE00000003CDS9677404596774119+
GWHAAZE00000003three_prime_UTR9677412096774150+
GWHAAZE00000003three_prime_UTR9677430396774450+
GWHAAZE00000003three_prime_UTR9677618596776360+
Transcript Sequence

Network for GWHGAAZE013101

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02207.21zf-UBR1261928.90E-19
PF18995.1PRT6_C155919103.70E-48
PF18995.1PRT6_C193520085.10E-30
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box
Ubiquitin FamilyUBR-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.037
SRR3591706second leaf15.598
SRR3591707mature leaf18.851
SRR3591708Shoot apex19.978
SRR3591709Stem21.350
SRR3591710White floral bud28.700
SRR3591711White flower25.183
SRR3591712Green floral bud21.517
SRR3591713Yellow flower19.190
SRP173429 SRR8316895Juvenile bud stage 13.558
SRR8316896Juvenile bud stage 18.174
SRR8316897Juvenile bud stage 10.043
SRR8316894Third green stage 8.938
SRR8316900Third green stage 18.017
SRR8316901Third green stage 17.385
SRR8316898Complete white stage 6.531
SRR8316899Complete white stage 23.821
SRR8316903Complete white stage 18.971
SRR8316902Silver flowering stage9.881
SRR8316904Silver flowering stage19.054
SRR8316905Silver flowering stage7.085
SRR8316906Gold flowering stage 26.065
SRR8316907Gold flowering stage 21.057
SRR8316908Gold flowering stage 25.909
SRP132670SRR6706286Control15.938
SRR6706287Light intensity 50%17.941
SRR6706288Light intensity 20%19.170
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.853
CNS0095593Slightly white alabastrum(diploid) 29.481
CNS0095594Slightly white alabastrum(diploid) 39.379
CNS0095595Whole white alabastrum(diploid) 27.577
CNS0095596Whole white alabastrum(diploid) 36.519
CNS0095597Whole white alabastrum(diploid) 47.474
CNS0095598Silvery flower (diploied) 115.105
CNS0095599Silvery flower (diploied) 212.788
CNS0095600Silvery flower (diploied) 327.438
CNS0095601Golden flower (diploid) 112.977
CNS0095602Golden flower (diploid) 228.915
CNS0095603Golden flower (diploid) 327.604
CNS0095604Slightly white alabastrum(tetraploid) 113.201
CNS0095605Slightly white alabastrum(tetraploid) 28.959
CNS0095606Slightly white alabastrum(tetraploid) 328.509
CNS0095607Whole white alabastrum(tetraploid) 17.384
CNS0095608Whole white alabastrum(tetraploid) 25.604
CNS0095609Whole white alabastrum(tetraploid) 318.453
CNS0095610Silvery flower (diploied) 131.988
CNS0095611Silvery flower (diploied) 233.709
CNS0095612Silvery flower (diploied) 323.822
CNS0095613Golden flower (tetraploid) 112.454
CNS0095614Golden flower (tetraploid) 222.153
CNS0095615Golden flower (tetraploid) 332.602
CRA001975CRR073297Stem 113.731
CRR073298Stem 212.160
CRR073299Stem 38.676
CRR073300Leaf 113.695
CRR073301Leaf 210.434
CRR073302Leaf 36.919
CRR073303Juvenile bud 18.703
CRR073304Juvenile bud 25.906
CRR073305Juvenile bud 312.532
CRR073306Third green 13.973
CRR073307Third green 21.811
CRR073308Third green 33.945
CRR073309Second white 14.857
CRR073310Second white 26.266
CRR073311Second white 39.163
CRR073312Silver flowering 16.740
CRR073313Silver flowering 25.222
CRR073314Silver flowering 35.219
CRR073315Gold flowering 15.095
CRR073316Gold flowering 28.913
CRR073317Gold flowering 35.620
CRR073318Tawny withering 18.503
CRR073319Tawny withering 27.296
CRR073320Tawny withering 36.763