Detail information of GWHGAAZE013192


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010653588.12.23612E-76PREDICTED: uncharacterized protein LOC100263609 [Vitis vinifera]
Swissprottr|Q9C7B1|TRP3_ARATH9E-10Telomere repeat-binding protein 3
trEMBLtr|D7TQN4|D7TQN4_VITVI8E-77Putative uncharacterized protein {ECO:0000313|EMBL:CBI32754.3}
TAIR10AT2G37025.23E-30TRF-like 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9835276298359980-
GWHAAZE00000003mRNA9835276298359980-
GWHAAZE00000003exon9835962098359980-
GWHAAZE00000003exon9835852698358693-
GWHAAZE00000003exon9835787098357955-
GWHAAZE00000003exon9835761698357667-
GWHAAZE00000003exon9835662298356709-
GWHAAZE00000003exon9835607598356539-
GWHAAZE00000003exon9835587098355964-
GWHAAZE00000003exon9835543698355663-
GWHAAZE00000003exon9835389598353951-
GWHAAZE00000003exon9835276298352917-
GWHAAZE00000003five_prime_UTR9835992098359980-
GWHAAZE00000003CDS9835962098359919-
GWHAAZE00000003CDS9835852698358693-
GWHAAZE00000003CDS9835787098357955-
GWHAAZE00000003CDS9835761698357667-
GWHAAZE00000003CDS9835662298356709-
GWHAAZE00000003CDS9835607598356539-
GWHAAZE00000003CDS9835587098355964-
GWHAAZE00000003CDS9835543698355663-
GWHAAZE00000003CDS9835389598353951-
GWHAAZE00000003CDS9835276298352917-
Transcript Sequence

Network for GWHGAAZE013192

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding4545017.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.511
SRR3591706second leaf5.494
SRR3591707mature leaf6.802
SRR3591708Shoot apex9.981
SRR3591709Stem8.851
SRR3591710White floral bud7.144
SRR3591711White flower6.043
SRR3591712Green floral bud8.609
SRR3591713Yellow flower3.206
SRP173429 SRR8316895Juvenile bud stage 5.680
SRR8316896Juvenile bud stage 7.548
SRR8316897Juvenile bud stage 3.624
SRR8316894Third green stage 3.431
SRR8316900Third green stage 8.963
SRR8316901Third green stage 7.271
SRR8316898Complete white stage 2.668
SRR8316899Complete white stage 8.774
SRR8316903Complete white stage 5.593
SRR8316902Silver flowering stage2.642
SRR8316904Silver flowering stage4.337
SRR8316905Silver flowering stage2.133
SRR8316906Gold flowering stage 5.915
SRR8316907Gold flowering stage 4.494
SRR8316908Gold flowering stage 5.402
SRP132670SRR6706286Control3.243
SRR6706287Light intensity 50%3.454
SRR6706288Light intensity 20%3.921
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.540
CNS0095593Slightly white alabastrum(diploid) 25.573
CNS0095594Slightly white alabastrum(diploid) 37.091
CNS0095595Whole white alabastrum(diploid) 26.332
CNS0095596Whole white alabastrum(diploid) 36.856
CNS0095597Whole white alabastrum(diploid) 47.450
CNS0095598Silvery flower (diploied) 17.847
CNS0095599Silvery flower (diploied) 25.150
CNS0095600Silvery flower (diploied) 36.203
CNS0095601Golden flower (diploid) 18.918
CNS0095602Golden flower (diploid) 25.164
CNS0095603Golden flower (diploid) 35.185
CNS0095604Slightly white alabastrum(tetraploid) 18.112
CNS0095605Slightly white alabastrum(tetraploid) 26.912
CNS0095606Slightly white alabastrum(tetraploid) 310.689
CNS0095607Whole white alabastrum(tetraploid) 16.343
CNS0095608Whole white alabastrum(tetraploid) 25.913
CNS0095609Whole white alabastrum(tetraploid) 36.478
CNS0095610Silvery flower (diploied) 14.873
CNS0095611Silvery flower (diploied) 25.850
CNS0095612Silvery flower (diploied) 34.558
CNS0095613Golden flower (tetraploid) 13.083
CNS0095614Golden flower (tetraploid) 23.248
CNS0095615Golden flower (tetraploid) 31.686
CRA001975CRR073297Stem 16.448
CRR073298Stem 25.801
CRR073299Stem 34.651
CRR073300Leaf 15.429
CRR073301Leaf 25.685
CRR073302Leaf 33.183
CRR073303Juvenile bud 13.059
CRR073304Juvenile bud 22.885
CRR073305Juvenile bud 34.120
CRR073306Third green 11.170
CRR073307Third green 21.203
CRR073308Third green 31.844
CRR073309Second white 11.730
CRR073310Second white 23.180
CRR073311Second white 31.214
CRR073312Silver flowering 10.868
CRR073313Silver flowering 20.369
CRR073314Silver flowering 30.479
CRR073315Gold flowering 11.626
CRR073316Gold flowering 23.602
CRR073317Gold flowering 31.365
CRR073318Tawny withering 13.905
CRR073319Tawny withering 23.541
CRR073320Tawny withering 33.576