Gene detail

Detail information of GWHGAAZE013355

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007223176.1	1.0712E-104	hypothetical protein PRUPE_ppa009143mg [Prunus persica]
Swissprot	tr\|Q9LDE1\|MY108_ARATH	6E-64	Transcription factor MYB108
trEMBL	tr\|M5XYM8\|M5XYM8_PRUPE	4E-105	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24375.1}
TAIR10	AT1G68320.1	3E-67	myb domain protein 62

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101315118	101316216	-
GWHAAZE00000003	mRNA	101315118	101316216	-
GWHAAZE00000003	exon	101315118	101315715	-
GWHAAZE00000003	exon	101315811	101315940	-
GWHAAZE00000003	exon	101316057	101316216	-
GWHAAZE00000003	CDS	101316057	101316216	-
GWHAAZE00000003	CDS	101315811	101315940	-
GWHAAZE00000003	CDS	101315118	101315715	-

Transcript Sequence
>GWHTAAZE013369 ATGAGTGAAGCTATACCAGCTAAGAGAATATGCAACAGTTCAAATGAAGAGGAATTTGGGCTCAGAAGAGGGCCATGGACTCTTGAAGAAGACACTCTTCTTATCCATTACATCACTTCTCATGGCGAAGGCCGTTGGAATTTTTTAGCAAAATGTGCTGGATTAAAGAGAACTGGGAAAAGTTGTAGATTGAGATGGCTAAATTATTTAAAACCGGACATAAAACGTGGAAACCTTACCCCACAAGAACAAATCTTGATTCTTGAACTCCATTCCAAGTGGGGTAACCGGTGGTCCAAAATCGCGCAGCATCTACCAGGAAGAACAGATAATGAGATCAAGAACTACTGGAGAACAAGAGTTCAAAAACAAGCGCGGCAATTCAAGATTGACTCTAATAGCAAGAGGTTCATTGAAGAGCTTAGGAAGTTTTGGATGCCAAGATTGCTCGAAAAAATGGAGCAAAATTCATCATCATCATTTTCTACCATGTCCACCATGGAAAGTCAAGATTCTATAACCCGGGGATTGGCAGAATTTTCTCGACAACCAAACAAGCCAATGAACAATATTGATCCTCACAAGGACAAGTCAAGTTCGAAAGGTTGTTCATCAGAATCCTTTAGCATAATACAAAATTCTGATCAACTGCCAAATGAAAGCCTCGATCATGGCGGCTACGGTAACTCTGCCTACACCAATTCACTCCCAAATGACTGTTATTATGTGGGTAATAACAGCTTTGATCACATGGAGGATTTCAACCAGCCCGACATGTCAACAGCGGGGCTGATGTGGGACTGCCAGATGGCAGAAATTGATTGGGTCAACGACGATGTGGAAGGTGCTTTTTGGAACATGGATGAACTGTGGCAATTTAGGAAGTAG

Network for GWHGAAZE013355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	23	70	6.10E-15
PF00249.32	Myb_DNA-binding	76	119	9.60E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.545
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.773
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	3.665
	SRR3591711	White flower	8.388
	SRR3591712	Green floral bud	0.282
	SRR3591713	Yellow flower	0.480
SRP173429	SRR8316895	Juvenile bud stage	1.208
	SRR8316896	Juvenile bud stage	1.543
	SRR8316897	Juvenile bud stage	0.321
	SRR8316894	Third green stage	0.398
	SRR8316900	Third green stage	0.809
	SRR8316901	Third green stage	0.683
	SRR8316898	Complete white stage	0.280
	SRR8316899	Complete white stage	0.888
	SRR8316903	Complete white stage	5.798
	SRR8316902	Silver flowering stage	0.131
	SRR8316904	Silver flowering stage	0.660
	SRR8316905	Silver flowering stage	0.053
	SRR8316906	Gold flowering stage	0.182
	SRR8316907	Gold flowering stage	0.227
	SRR8316908	Gold flowering stage	0.714
SRP132670	SRR6706286	Control	1.899
	SRR6706287	Light intensity 50%	0.931
	SRR6706288	Light intensity 20%	0.727
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.583
	CNS0095593	Slightly white alabastrum(diploid) 2	0.645
	CNS0095594	Slightly white alabastrum(diploid) 3	0.869
	CNS0095595	Whole white alabastrum(diploid) 2	0.692
	CNS0095596	Whole white alabastrum(diploid) 3	0.913
	CNS0095597	Whole white alabastrum(diploid) 4	0.010
	CNS0095598	Silvery flower (diploied) 1	13.164
	CNS0095599	Silvery flower (diploied) 2	2.114
	CNS0095600	Silvery flower (diploied) 3	1.695
	CNS0095601	Golden flower (diploid) 1	6.572
	CNS0095602	Golden flower (diploid) 2	5.479
	CNS0095603	Golden flower (diploid) 3	5.641
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.121
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.183
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.467
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.459
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.470
	CNS0095610	Silvery flower (diploied) 1	0.769
	CNS0095611	Silvery flower (diploied) 2	5.766
	CNS0095612	Silvery flower (diploied) 3	1.848
	CNS0095613	Golden flower (tetraploid) 1	2.153
	CNS0095614	Golden flower (tetraploid) 2	1.099
	CNS0095615	Golden flower (tetraploid) 3	2.553
CRA001975	CRR073297	Stem 1	4.775
	CRR073298	Stem 2	2.630
	CRR073299	Stem 3	3.896
	CRR073300	Leaf 1	0.896
	CRR073301	Leaf 2	0.462
	CRR073302	Leaf 3	0.281
	CRR073303	Juvenile bud 1	0.795
	CRR073304	Juvenile bud 2	0.494
	CRR073305	Juvenile bud 3	0.325
	CRR073306	Third green 1	0.074
	CRR073307	Third green 2	0.254
	CRR073308	Third green 3	1.177
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.070
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.059
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.401
	CRR073319	Tawny withering 2	0.212
	CRR073320	Tawny withering 3	0.563