Gene detail

Detail information of GWHGAAZE013378

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27039.3	3.2324E-113	unnamed protein product [Vitis vinifera]
trEMBL	tr\|A5BV84\|A5BV84_VITVI	1E-113	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN68344.1}
TAIR10	AT1G13340.1	4E-61	Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101741070	101742691	+
GWHAAZE00000003	mRNA	101741070	101742691	+
GWHAAZE00000003	exon	101741070	101741255	+
GWHAAZE00000003	exon	101741350	101741453	+
GWHAAZE00000003	exon	101741570	101741741	+
GWHAAZE00000003	exon	101741835	101741957	+
GWHAAZE00000003	exon	101742056	101742691	+
GWHAAZE00000003	CDS	101741070	101741255	+
GWHAAZE00000003	CDS	101741350	101741453	+
GWHAAZE00000003	CDS	101741570	101741741	+
GWHAAZE00000003	CDS	101741835	101741957	+
GWHAAZE00000003	CDS	101742056	101742487	+
GWHAAZE00000003	three_prime_UTR	101742488	101742691	+

Transcript Sequence
>GWHTAAZE013392 ATGGGGAAGAGGCTTGATGCTCTGCTAGGAAGGAGACTCAAGACCTCCAAACTCAAACCCACAGTTGACCTGGCTGTCACTCGCCTCGCCGTTCTTAACAAACAGCGGCAGGCACGCCTTTCAGTGGCCCGCTCTGATGTTATTCAACTCCTCAACCTTGGCCACCATGAACCGGCTCTTCTTCGGGTTGAGCAGGTGATCAAGGAGCAGAACTTGCTAGACGTTTTTTCTATGATAGATGGATATTGCCATCTATTAATAGAGATGGTCAACCTTATAGAGCAGGCAAAAGTATGTCCTGATGAACTAAAGGAGGCTATATCAAGCTTGCTTTACACGTCTACAAGATGCGGGGAATTGCCAGAGCTTCAAGAGATTCGTGCCATTTTCACATCCCGGTTTGGGAAGGAATTTGCAGCCAGCGCTATCGAATTGTGGAACAATTGTGGAGTAAATCCTAAGATTATTCAAAAGCTATCAACTAAGCAGCCAAGCTTGGATACCAGATTGAAAGTCCTAAAGGAAATTGCCTCTACCAATGGCATCATTCTACAAATTGACCAAACTTCTCAAGTAATCACAGCGCCTAAAGCAGACCCAAAAGAAGACAATTCACCTATTTTGATTGAGGAGATAGAAGAAGTTGACGGTTTCTCCAATTCAATGAAAGGGAGGAGAAAGTATAGGGATGTAGCAGATGCAGCACAAGCAGCTTTTGAATCTGCTGCTTATGCAGCAGCAGCTGCAAGAGCTGCTGTGGAACTCTCTCGCTCCGAGTCACTCGATTCTGATGATCAAAATAGTCCCAGATCACGGCCAAGAACTGGCACGCGTGGGCATGTGAAATCTAAATTTCAAAACTATCATTCTGAATCTGAAAAAGAGGAAATATATATTGAAAGTAAGGCTGAAGGATCGAAATACAATAAGAATGCAGTAGAATTTAAGAGATCAGAATCTAACTCAAGTTCAGATTATGAGACAAATGAGGGAAGAAATATTTCATCACGTAGATGATAAGCATGTGTCGAGTTTAATAGAAATCTGTTTTAAGTTTTGTGAGTTGTGTATAGTCTATGACGGCTATAAATTTATATTTTATCTATTTTGGACAGTGTCATTGTAATGGTGCAGGAGCATTTTATTGGGGGTAAAGCTAAAACTGTTGTATTGGTTGTTGAGGTTTTAAAATAAATATACTGCTTTCCAGTTTGTGAAATA

Network for GWHGAAZE013378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03398.15	Ist1	19	182	6.20E-52

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19476	IST1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.225
	SRR3591706	second leaf	1.967
	SRR3591707	mature leaf	5.028
	SRR3591708	Shoot apex	1.181
	SRR3591709	Stem	12.814
	SRR3591710	White floral bud	9.971
	SRR3591711	White flower	23.294
	SRR3591712	Green floral bud	5.083
	SRR3591713	Yellow flower	22.223
SRP173429	SRR8316895	Juvenile bud stage	10.560
	SRR8316896	Juvenile bud stage	18.204
	SRR8316897	Juvenile bud stage	14.186
	SRR8316894	Third green stage	2.027
	SRR8316900	Third green stage	4.466
	SRR8316901	Third green stage	4.655
	SRR8316898	Complete white stage	2.749
	SRR8316899	Complete white stage	14.880
	SRR8316903	Complete white stage	4.204
	SRR8316902	Silver flowering stage	8.955
	SRR8316904	Silver flowering stage	10.361
	SRR8316905	Silver flowering stage	6.196
	SRR8316906	Gold flowering stage	40.276
	SRR8316907	Gold flowering stage	22.814
	SRR8316908	Gold flowering stage	32.969
SRP132670	SRR6706286	Control	7.693
	SRR6706287	Light intensity 50%	6.297
	SRR6706288	Light intensity 20%	4.939
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.264
	CNS0095593	Slightly white alabastrum(diploid) 2	13.189
	CNS0095594	Slightly white alabastrum(diploid) 3	14.942
	CNS0095595	Whole white alabastrum(diploid) 2	11.138
	CNS0095596	Whole white alabastrum(diploid) 3	3.132
	CNS0095597	Whole white alabastrum(diploid) 4	6.767
	CNS0095598	Silvery flower (diploied) 1	32.896
	CNS0095599	Silvery flower (diploied) 2	37.572
	CNS0095600	Silvery flower (diploied) 3	23.122
	CNS0095601	Golden flower (diploid) 1	40.545
	CNS0095602	Golden flower (diploid) 2	37.488
	CNS0095603	Golden flower (diploid) 3	35.739
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.313
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.554
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.865
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.228
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.878
	CNS0095610	Silvery flower (diploied) 1	13.939
	CNS0095611	Silvery flower (diploied) 2	12.357
	CNS0095612	Silvery flower (diploied) 3	9.845
	CNS0095613	Golden flower (tetraploid) 1	11.349
	CNS0095614	Golden flower (tetraploid) 2	17.111
	CNS0095615	Golden flower (tetraploid) 3	14.042
CRA001975	CRR073297	Stem 1	4.842
	CRR073298	Stem 2	4.174
	CRR073299	Stem 3	4.474
	CRR073300	Leaf 1	2.322
	CRR073301	Leaf 2	5.794
	CRR073302	Leaf 3	0.788
	CRR073303	Juvenile bud 1	1.270
	CRR073304	Juvenile bud 2	1.195
	CRR073305	Juvenile bud 3	2.615
	CRR073306	Third green 1	3.982
	CRR073307	Third green 2	1.660
	CRR073308	Third green 3	1.656
	CRR073309	Second white 1	7.434
	CRR073310	Second white 2	14.107
	CRR073311	Second white 3	12.173
	CRR073312	Silver flowering 1	25.261
	CRR073313	Silver flowering 2	15.460
	CRR073314	Silver flowering 3	27.962
	CRR073315	Gold flowering 1	10.026
	CRR073316	Gold flowering 2	16.280
	CRR073317	Gold flowering 3	9.099
	CRR073318	Tawny withering 1	19.659
	CRR073319	Tawny withering 2	54.752
	CRR073320	Tawny withering 3	10.250