Gene detail

Detail information of GWHGAAZE013631

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG10872.1	1.4514E-133	2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic -like protein [Gossypium arboreum]
Swissprot	tr\|Q3ED65\|MENG_ARATH	1E-126	2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic (Precursor)
trEMBL	tr\|B9HLS4\|B9HLS4_POPTR	2E-131	Uncharacterized protein {ECO:0000313\|EMBL:EEE90050.2}
TAIR10	AT1G23360.1	1E-100	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	105577127	105580285	+
GWHAAZE00000003	mRNA	105577127	105580285	+
GWHAAZE00000003	exon	105577127	105577267	+
GWHAAZE00000003	exon	105577383	105577447	+
GWHAAZE00000003	exon	105577550	105577640	+
GWHAAZE00000003	exon	105578396	105578484	+
GWHAAZE00000003	exon	105578672	105578912	+
GWHAAZE00000003	exon	105579213	105579312	+
GWHAAZE00000003	exon	105580017	105580285	+
GWHAAZE00000003	CDS	105577127	105577267	+
GWHAAZE00000003	CDS	105577383	105577447	+
GWHAAZE00000003	CDS	105577550	105577640	+
GWHAAZE00000003	CDS	105578396	105578484	+
GWHAAZE00000003	CDS	105578672	105578912	+
GWHAAZE00000003	CDS	105579213	105579312	+
GWHAAZE00000003	CDS	105580017	105580117	+
GWHAAZE00000003	three_prime_UTR	105580118	105580285	+

Transcript Sequence
>GWHTAAZE013645 ATGGCTTCTCTTAGCCTCTCCTGTTTCCCATCAATATTAGTTTCGGAAGATCCCCCCTTCAACCGCCACCGACGGCACCTCGTTCGATGCTCTGATGACCGCCGGGCGCTTTTTAACCGCATTGCTCCTGTCTACGACAACCTAAACGATCTACTGAGTTTGGGTCAACATCGAATATGGAAACGAATGGCTGTGTCATGGAGTGGAGCGAAGGAAGGAGACAGTGTGTTGGATTTGTGCTGTGGAAGTGGGGATTTAGCATTCCTTTTGTCTGAGAAAGTTGGATCCTGTGGCAAGGTTATTGGCCTTGATTTCTCCCAGGAGCAATTATTGGTTGCTTCCTCTCGGCAGCACTTACTCCCAAAGGCCTGTTACAATAATATTATTATTTCCATAATAAGCATTGATGTCACTCACGTGTTTAATTATAGGTGGGTGGAAGGCGATGCGCTTGACTTACCATTTTCTGACTGTTATGCTGATGCCATTACCATTGGTTATGGTTTACGGAACATGGTAGACCGACATAAAGCCATGAAGGAGATGTATCGAGTTTTGAAACCTGGCGCTAAACTATCAATCCTTGACTTCAATAAAAGCGCCAACCCATTTAGTTCATTAATTCTGGGATGGATGATTGATAATGTAGTTGTTCCTGTGGCGACTAGTTATGGCCTTGCAGAGGAGTACAAGTATTTGAAAAGCTCAATTCAAGAATTTCTAACAGGAAAGGAGTTAGAAGAGCTTGCTTTTGAAGCCGGATTTTCTACTGCCACGCATTTCGAGGTCGGTGGAGGACTCATGGGGAACTTAGTGGCTACGCGGTAGACGAATTTAATGTGTATTTTTCATTTGCAATTTATAAACCTTTTTTTCTTTTTTGGAAGTAACGGCGTGATATGTTGAGAAAGACTTTGTTAGGTATCTAGTGTAGTCTGGATTCCTTATTTAGCACCTCTGGCCTCTGTTTGCGGAAACCATCTGCATTGGTATACA

Network for GWHGAAZE013631

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01209.19	Ubie_methyltran	36	269	5.60E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K23095	MENG, menG	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0042372	biological_process	phylloquinone biosynthetic process
GO:0008168	molecular_function	methyltransferase activity
GO:0052624	molecular_function	2-phytyl-1,4-naphthoquinone methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.726
	SRR3591706	second leaf	46.212
	SRR3591707	mature leaf	21.060
	SRR3591708	Shoot apex	42.924
	SRR3591709	Stem	11.648
	SRR3591710	White floral bud	8.856
	SRR3591711	White flower	6.252
	SRR3591712	Green floral bud	13.639
	SRR3591713	Yellow flower	2.448
SRP173429	SRR8316895	Juvenile bud stage	22.371
	SRR8316896	Juvenile bud stage	25.773
	SRR8316897	Juvenile bud stage	12.476
	SRR8316894	Third green stage	11.925
	SRR8316900	Third green stage	41.209
	SRR8316901	Third green stage	34.348
	SRR8316898	Complete white stage	10.410
	SRR8316899	Complete white stage	30.237
	SRR8316903	Complete white stage	14.022
	SRR8316902	Silver flowering stage	3.456
	SRR8316904	Silver flowering stage	8.415
	SRR8316905	Silver flowering stage	3.294
	SRR8316906	Gold flowering stage	5.582
	SRR8316907	Gold flowering stage	4.560
	SRR8316908	Gold flowering stage	3.127
SRP132670	SRR6706286	Control	29.446
	SRR6706287	Light intensity 50%	29.239
	SRR6706288	Light intensity 20%	29.331
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	31.547
	CNS0095593	Slightly white alabastrum(diploid) 2	26.444
	CNS0095594	Slightly white alabastrum(diploid) 3	27.722
	CNS0095595	Whole white alabastrum(diploid) 2	34.607
	CNS0095596	Whole white alabastrum(diploid) 3	42.369
	CNS0095597	Whole white alabastrum(diploid) 4	29.915
	CNS0095598	Silvery flower (diploied) 1	25.450
	CNS0095599	Silvery flower (diploied) 2	25.161
	CNS0095600	Silvery flower (diploied) 3	12.627
	CNS0095601	Golden flower (diploid) 1	22.890
	CNS0095602	Golden flower (diploid) 2	9.880
	CNS0095603	Golden flower (diploid) 3	10.389
	CNS0095604	Slightly white alabastrum(tetraploid) 1	25.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.699
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.392
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.372
	CNS0095610	Silvery flower (diploied) 1	4.653
	CNS0095611	Silvery flower (diploied) 2	6.320
	CNS0095612	Silvery flower (diploied) 3	2.941
	CNS0095613	Golden flower (tetraploid) 1	3.933
	CNS0095614	Golden flower (tetraploid) 2	4.712
	CNS0095615	Golden flower (tetraploid) 3	3.184
CRA001975	CRR073297	Stem 1	24.981
	CRR073298	Stem 2	24.543
	CRR073299	Stem 3	22.487
	CRR073300	Leaf 1	30.788
	CRR073301	Leaf 2	25.845
	CRR073302	Leaf 3	31.186
	CRR073303	Juvenile bud 1	28.556
	CRR073304	Juvenile bud 2	28.015
	CRR073305	Juvenile bud 3	17.241
	CRR073306	Third green 1	22.665
	CRR073307	Third green 2	16.428
	CRR073308	Third green 3	12.777
	CRR073309	Second white 1	6.911
	CRR073310	Second white 2	2.818
	CRR073311	Second white 3	1.275
	CRR073312	Silver flowering 1	0.424
	CRR073313	Silver flowering 2	1.194
	CRR073314	Silver flowering 3	0.410
	CRR073315	Gold flowering 1	22.497
	CRR073316	Gold flowering 2	33.385
	CRR073317	Gold flowering 3	18.562
	CRR073318	Tawny withering 1	16.733
	CRR073319	Tawny withering 2	11.621
	CRR073320	Tawny withering 3	14.851