Gene detail

Detail information of GWHGAAZE013696

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266306.2	PREDICTED: cyclin-dependent kinase G-2 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q7XUF4\|CDKG2_ORYSJ	Cyclin-dependent kinase G-2
trEMBL	tr\|F6HG49\|F6HG49_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51242.1}
TAIR10	AT1G67580.2	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	106527296	106534880	+
GWHAAZE00000003	mRNA	106527296	106534880	+
GWHAAZE00000003	exon	106527296	106529043	+
GWHAAZE00000003	exon	106529622	106529796	+
GWHAAZE00000003	exon	106529880	106529968	+
GWHAAZE00000003	exon	106530160	106530271	+
GWHAAZE00000003	exon	106530382	106530488	+
GWHAAZE00000003	exon	106530584	106530761	+
GWHAAZE00000003	exon	106530891	106530968	+
GWHAAZE00000003	exon	106531156	106531235	+
GWHAAZE00000003	exon	106533179	106533301	+
GWHAAZE00000003	exon	106534811	106534880	+
GWHAAZE00000003	CDS	106527296	106529043	+
GWHAAZE00000003	CDS	106529622	106529796	+
GWHAAZE00000003	CDS	106529880	106529968	+
GWHAAZE00000003	CDS	106530160	106530271	+
GWHAAZE00000003	CDS	106530382	106530488	+
GWHAAZE00000003	CDS	106530584	106530683	+
GWHAAZE00000003	three_prime_UTR	106530684	106530761	+
GWHAAZE00000003	three_prime_UTR	106530891	106530968	+
GWHAAZE00000003	three_prime_UTR	106531156	106531235	+
GWHAAZE00000003	three_prime_UTR	106533179	106533301	+
GWHAAZE00000003	three_prime_UTR	106534811	106534880	+

Transcript Sequence
>GWHTAAZE013710 ATGCACACTTACATGGCGGCAGCAGGAAGACATGGTATCTACCGCGATGATGAATTCAGGGAACGCCGCGATGATGAATTCAGGGAACGTAGAGAATTTGCCAATTCCAAGGGAGAACGCGAAAGAATTAGGGAAGGTTCTGGTGATTATGGGAGGGGTCGTATTCTCGACCGAAATAGTAGAGATAAGGGTAGGGTTAGACAGAAGGATATTAAAGAGAGGGAATTTATGAATGGCGGGTATCGCTCTGCTTCAAGCAAGAGTGATTCAGGGAGCAGCGGTAGTATGGGAGGTCCAAGACGGTCTGAGTTTCCAGTCAGAACCCTAGACCGGGAGCCCGGGGAGTTGTCCAGTGAAAGCGGATCTGACGAGGCTATTGATTCCGTATCAAGGGCTAAAGATAACGACGCTTCGAAGCTAGAGAACGGGACTCGGTCACCCTTGCATAGTAAAAAGAGGAAATTTTCACCAATTGTTTGGGACAGAGATGACAAGGATGCGAGTAATTTGTCTAAGAGTGGGATGTCCCCAGCAACTACTACTAATCTTCCCCCTCCACCTCCTCTTCCCAAATCTTACCTTCAGTCACCTAACCCTATTACGAGTGGCAATATACACATCTCTCCTCCCCAAAATACCAAAATTCAGATCTCAGAGCCATCTCCTCTCGGGGATATTGTTAGACCGTCTGTGTCCGCTGCATCTGAATCTCCAGTTCATTTATTATCTTCCTCACTTCTGGAACCGCATGTGGATTACAATCAGGCAGTTGAAAAACCTGCAGATGAAGATTATGCACCTACACGGAATATAAGATCATCTCGGTGGGCAAACGATGCCAATTCCCCAGTTGATGAAGGTGAAATATCTGATGCCCCGACTGATAATGGGTTGCAGAAAAGGAGGAAGAAAATATCTCTTTCAGCCTCAGCTGAAGTAAGGTTATGTAAGAAGTCGCTGAGTCCTGAGCTTGGGGAGCTCAAGATAGAAGGCTCTGAAGGAACTAGGAGTAGGTCATCTGAATCTGAAGAAGGTTTTCGTGGTGGGTCTTCCTGCAGAGATGATTACCTAGACAGTGCTCTGAACCGGAATGACCACATGGAGATAGACGGGGAGCAAGGCAATTATGATACTAGTCCTAGCCAGGCTGATACAGATTCTGAGGATGAGTTTGATTCTCGTGATAAGCCTGCAGGCCCCCCTCAAAGATGCGTCAACATGCTTCACGGGTGTAGAAGTGTTGATGAGTTTGAAAGGTTGAACAAGATAGACGAAGGCACTTATGGTGTTGTTTACAGGGCCAGAGATAACAAAACAGGAGAAATTGTTGCTTTGAAGAAGGTCAAGATGGAGAAAGAAAGAGAAGGTTTTCCTTTAACTTCGTTAAGGGAAATAAACATTCTTCTTTCTTTTCATCACTCCTCAATTGTGGATGTTAAAGAAGTTGTAGTGGGAAGTAATCTTGACAGTATTTTTATGGTAATGGAGTACATGGAACATGATCTTAAGGCACTGATGGAGACAATGAAACAGCCATTCAGTCAGAGTGAGGTTAAATGCCTCATGCTCCAGCTGTTGGAGGGTGTGAAGTATCTTCATGATAACTGGGTTCTTCACCGAGATTTAAAGACGTCAAATCTGCTCCTAAATAATCGTGGTGACCTGAAGATATGTGACTTTGGTTTGGCTCGCCAATATGGGAGCCCATTGAAACCATATACACATTTGGTGGTTACTCTGTGGTACAGGGCACCTGAACTTCTTTTGGGAGCAAAACAATACTCAACGGCAATTGATATGTGGTCATTGGGTTGCATTATGGCTGAACTGTTGTCAAAGGAACCACTTTTCAATGGGAGAACAGAGGTTGATCAACTTGACAAGGTAATTGCGTTGCCGTCTTTAGCTTGCCATTTAGTAATGATTTTCAGAACCCTTGGCACACCAAATGAGACAATCTGGCCGGGGTTTTCCAAACTTCCTGGAGTCAAGGTGAACTTCGTAAAGCACCAGTATAATTTGTTGCGCAGGAAATTTCCGGCTACATCTTTCACGGGCACACCAGTTCTCTCTGATGCTGGATTTGACTTGTTGAATAAACTTCTAACATATGATCCCGAGAAGAGGATAACAGCTGAAGCTGCTCTTAGCCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAGTCCAAAGATTTCATGCCTACATTTCCGGCTCAACATGCTCAAGACAGGCGCATGCGAAGAATAATGAAGAGTCCAGATCCTTTAGAAGAGCAGCGCCGGAAGGAATTGCAACAAGGGGAATTAGGGACAGGCGGGTTATTTGGCTAAGAGATATGACTAGGTGCTCAGAAGCTCTAATGCTTATCCGGTAGTCTTTTGCAGTATTCACAGGTTGACTTGGTTGAGATATGAAGCAGATTGACTTTATTTACCAGATCTGGTCGTTAAATAGAAATCCAACTCTGACACTGCTCGCATCGCAAGAGGCGGTTGGTGTAAAAGCGGAGGGGGCATTCTTAGCTTTTCATTGACACAGAGTTTGACAGAAACTATTGCACTTGAAGGTCATTGAAGTATCAAAGCAAGCAGGTTGCGGATGTTAACTGCTGACCCTGGAATTTATAGAATTTTCCAATTATTTTTCCGTTCTTCAGATACTGATTTTGTTCCATCAGGGCTAAATTGAGTTGTTTAGGCGTTTCTTGACAAGATTGAGGCCCTCATTTGATGTTCCTACAAAAGAAGACACTCATTTAC

Network for GWHGAAZE013696

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	417	721	7.50E-73

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CDK-PITSLRE

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.333
	SRR3591706	second leaf	20.769
	SRR3591707	mature leaf	23.289
	SRR3591708	Shoot apex	25.646
	SRR3591709	Stem	37.293
	SRR3591710	White floral bud	27.579
	SRR3591711	White flower	30.418
	SRR3591712	Green floral bud	20.487
	SRR3591713	Yellow flower	23.903
SRP173429	SRR8316895	Juvenile bud stage	68.067
	SRR8316896	Juvenile bud stage	70.427
	SRR8316897	Juvenile bud stage	77.326
	SRR8316894	Third green stage	19.608
	SRR8316900	Third green stage	28.968
	SRR8316901	Third green stage	45.668
	SRR8316898	Complete white stage	13.519
	SRR8316899	Complete white stage	45.770
	SRR8316903	Complete white stage	28.972
	SRR8316902	Silver flowering stage	21.105
	SRR8316904	Silver flowering stage	30.931
	SRR8316905	Silver flowering stage	14.723
	SRR8316906	Gold flowering stage	42.112
	SRR8316907	Gold flowering stage	41.743
	SRR8316908	Gold flowering stage	48.822
SRP132670	SRR6706286	Control	27.449
	SRR6706287	Light intensity 50%	31.266
	SRR6706288	Light intensity 20%	29.445
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.515
	CNS0095593	Slightly white alabastrum(diploid) 2	22.883
	CNS0095594	Slightly white alabastrum(diploid) 3	25.611
	CNS0095595	Whole white alabastrum(diploid) 2	20.934
	CNS0095596	Whole white alabastrum(diploid) 3	11.183
	CNS0095597	Whole white alabastrum(diploid) 4	15.994
	CNS0095598	Silvery flower (diploied) 1	44.144
	CNS0095599	Silvery flower (diploied) 2	26.596
	CNS0095600	Silvery flower (diploied) 3	34.537
	CNS0095601	Golden flower (diploid) 1	33.766
	CNS0095602	Golden flower (diploid) 2	44.689
	CNS0095603	Golden flower (diploid) 3	42.721
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.697
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.567
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.250
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.115
	CNS0095610	Silvery flower (diploied) 1	40.256
	CNS0095611	Silvery flower (diploied) 2	22.790
	CNS0095612	Silvery flower (diploied) 3	38.511
	CNS0095613	Golden flower (tetraploid) 1	24.546
	CNS0095614	Golden flower (tetraploid) 2	27.892
	CNS0095615	Golden flower (tetraploid) 3	25.345
CRA001975	CRR073297	Stem 1	36.871
	CRR073298	Stem 2	34.021
	CRR073299	Stem 3	12.028
	CRR073300	Leaf 1	36.434
	CRR073301	Leaf 2	37.322
	CRR073302	Leaf 3	12.934
	CRR073303	Juvenile bud 1	11.500
	CRR073304	Juvenile bud 2	8.039
	CRR073305	Juvenile bud 3	24.733
	CRR073306	Third green 1	7.057
	CRR073307	Third green 2	6.697
	CRR073308	Third green 3	9.029
	CRR073309	Second white 1	8.154
	CRR073310	Second white 2	9.678
	CRR073311	Second white 3	8.571
	CRR073312	Silver flowering 1	11.489
	CRR073313	Silver flowering 2	9.990
	CRR073314	Silver flowering 3	6.866
	CRR073315	Gold flowering 1	8.782
	CRR073316	Gold flowering 2	14.968
	CRR073317	Gold flowering 3	7.002
	CRR073318	Tawny withering 1	17.720
	CRR073319	Tawny withering 2	25.196
	CRR073320	Tawny withering 3	26.952