Gene detail

Detail information of GWHGAAZE013729

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011086824.1	2.3994E-132	PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like [Sesamum indicum]
Swissprot	tr\|Q9C6P5\|RAVL2_ARATH	5E-99	AP2/ERF and B3 domain-containing transcription factor At1g50680
trEMBL	tr\|F6HYI2\|F6HYI2_VITVI	1E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB59746.1}
TAIR10	AT1G50680.1	4E-81	AP2/B3 transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107169147	107170136	+
GWHAAZE00000003	mRNA	107169147	107170136	+
GWHAAZE00000003	exon	107169147	107170136	+
GWHAAZE00000003	CDS	107169147	107170136	+

Transcript Sequence
>GWHTAAZE013743 ATGAATTCATATACAAAAGTATTCAATACCAATGAAGAATCTGAAGATTCTTACTACAGCATTTATTCGTCTCAGACCCAGAAGCACTCAAGGGCTGAGAGTAATGTTTCTTTGCCTAGATTCAAAGGGGTTGTTCCACAACAAAATGGACACTGGGGCGCACAAATCTACGCAAACCACCAACGGATATGGCTTGGGACATTCAAATCCGAGATTGATGCGGCCAAGGCCTATGATAGTGCAGCTATCAAGCTTCGTGGTAGAGACTCCGACCGAAACTTTCCTTGGACAAACATTACAGTTCAAGAGCCAATATTTCAAAGTCATTACACAGTAGAAGAAATTTTGAACCTAATCAAGGATGGATCCTATCCATCAAAGTTTGCGCACTTTTTGACTCAAAGACAAGACGAGGAATTAGATCAGAATTTGGCTATGGTGCGTGGCAATGGAGGGCTATCCTGTAGACTACTTTTCCAAAAGGAACTAACGCCAAGTGATGTGGGTAAGCTTAATAGGCTAGTTATCCCAAAGAAATATGCTATTAAGTACTTTCCGAATATTGCTGAAACTGAAAGCAAGGAAGAAGATGAGAGCATTTCGATCGTTGATGATGTGCAACTAGTTTTTTATGATAGACTAATGAGGTTGTGGAAGTTTCGTTATTGCTACTGGAAGAGTAGCCAGAGCTATGTGTTCACAAGGGGATGGAATCGATTTGTAAGGGAAAAGGATCTAAAGGCTAATGACACCGTTGCTTTTTATGTATATGAGAATGCGCAAGGGCCTAAACAAGGGCATACATTTTTTGTCATTGATGTGGGTTATAAAGGTGCAATGAACAATGTGGGGTTGGGGCAAACCATAAACAATGGGTTAGTTAAGGAACAGGAAGAGGAGATAGAGGATCAGAAGCAGCTGGTGGGATCACCATCAGAATGCCATGTTGACAAAAAAGGTTTCAAGCTCTTTGGTGTTCAGATTCTCTAA

Network for GWHGAAZE013729

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	39	87	3.40E-06
PF02362.22	B3	159	259	1.10E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-RAV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.478
	SRR3591711	White flower	1.160
	SRR3591712	Green floral bud	0.229
	SRR3591713	Yellow flower	0.969
SRP173429	SRR8316895	Juvenile bud stage	0.228
	SRR8316896	Juvenile bud stage	0.235
	SRR8316897	Juvenile bud stage	0.256
	SRR8316894	Third green stage	0.460
	SRR8316900	Third green stage	0.365
	SRR8316901	Third green stage	0.415
	SRR8316898	Complete white stage	0.205
	SRR8316899	Complete white stage	0.094
	SRR8316903	Complete white stage	0.523
	SRR8316902	Silver flowering stage	0.148
	SRR8316904	Silver flowering stage	0.437
	SRR8316905	Silver flowering stage	0.280
	SRR8316906	Gold flowering stage	0.236
	SRR8316907	Gold flowering stage	0.059
	SRR8316908	Gold flowering stage	0.437
SRP132670	SRR6706286	Control	0.121
	SRR6706287	Light intensity 50%	0.023
	SRR6706288	Light intensity 20%	0.120
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.447
	CNS0095593	Slightly white alabastrum(diploid) 2	0.129
	CNS0095594	Slightly white alabastrum(diploid) 3	0.131
	CNS0095595	Whole white alabastrum(diploid) 2	0.531
	CNS0095596	Whole white alabastrum(diploid) 3	0.300
	CNS0095597	Whole white alabastrum(diploid) 4	0.349
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.179
	CNS0095600	Silvery flower (diploied) 3	0.462
	CNS0095601	Golden flower (diploid) 1	0.362
	CNS0095602	Golden flower (diploid) 2	0.170
	CNS0095603	Golden flower (diploid) 3	0.183
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.092
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.140
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.036
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	1.072
	CNS0095611	Silvery flower (diploied) 2	0.235
	CNS0095612	Silvery flower (diploied) 3	0.035
	CNS0095613	Golden flower (tetraploid) 1	0.132
	CNS0095614	Golden flower (tetraploid) 2	0.024
	CNS0095615	Golden flower (tetraploid) 3	0.270
CRA001975	CRR073297	Stem 1	0.286
	CRR073298	Stem 2	0.204
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.204
	CRR073301	Leaf 2	0.212
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.080
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.053
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.028
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000