Gene detail

Detail information of GWHGAAZE013758

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009361897.1	PREDICTED: retinoblastoma-related protein-like isoform X2 [Pyrus x bretschneideri]
Swissprot	tr\|B9SVG9\|RBR_RICCO	Retinoblastoma-related protein
trEMBL	tr\|A0A0A0KRV5\|A0A0A0KRV5_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN52338.1}
TAIR10	AT3G12280.2	retinoblastoma-related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	107718190	107722910	-
GWHAAZE00000003	mRNA	107718190	107722910	-
GWHAAZE00000003	exon	107722898	107722910	-
GWHAAZE00000003	exon	107722581	107722816	-
GWHAAZE00000003	exon	107721648	107722482	-
GWHAAZE00000003	exon	107721251	107721413	-
GWHAAZE00000003	exon	107721065	107721164	-
GWHAAZE00000003	exon	107719925	107720101	-
GWHAAZE00000003	exon	107719728	107719847	-
GWHAAZE00000003	exon	107719506	107719650	-
GWHAAZE00000003	exon	107719259	107719376	-
GWHAAZE00000003	exon	107718190	107718337	-
GWHAAZE00000003	CDS	107722898	107722910	-
GWHAAZE00000003	CDS	107722581	107722816	-
GWHAAZE00000003	CDS	107721648	107722482	-
GWHAAZE00000003	CDS	107721251	107721413	-
GWHAAZE00000003	CDS	107721065	107721164	-
GWHAAZE00000003	CDS	107719925	107720101	-
GWHAAZE00000003	CDS	107719728	107719847	-
GWHAAZE00000003	CDS	107719506	107719650	-
GWHAAZE00000003	CDS	107719259	107719376	-
GWHAAZE00000003	CDS	107718190	107718337	-

Transcript Sequence
>GWHTAAZE013772 ATGTGTTTGGGAGTTAGCACTTATTTGCTGGATTTTGTTATCCCATTTCATGCAGTTGGTTTCATCTATTTTGAAGATTTAATGGGAGAATCATCTTTGCCTTCCGGTTTAAGAAATCTAGAAAAGAATTGCGAGGACACTGTTCATAATAAGAGTGATGTGGATGAGAAGGTGCTTATTAATGAGGCGGATAGCCTGTGTGGTTCCAGCAGTTTGTCTGAGGGTGCAATAAATATGAGCGAGACCAAGAGAAAAATTGAGATAGCATCCCCAGCAAAGACAATGAAAAGTCCGCTCTCCCCATTCCGTTCTCCTTCGGTGACTACTCCTGCAAGCACAGGAATAACAACTACGACATGGCTTCACACCATCATTTCTCCACTTCCATCAATGCCTTCAGCAGAGCTGGAGCTATTCTTGTCCAAATGTGATAAGGATGTAACTCTTGATGTAGTACACAGGGCTCATGTAATCTTGGAGGCTATATTTCCGAGTAGTGGTCTGGGGGAGTGTAGTGTAACTGGAAGCCTGCAGAGCACAAACCTGATGGATAACATTTGGGCAGAACAACGTAGATTGGAAGCACTCAAGTTATACTATAAAGTTTTGCAAGCAATGTGTAGAGCGGAGGCCCAAATTTTGCATGCCAGCAATTTGACCTCTTTGCTAACTAATGAGAGGTTCCACAGATGTATGCTTGCGTGTTCAGCAGAGTTAGTTCTTGCCACTCATAAGACGGTAACCATGTTGTTTCCAGCAGTGTTGGAAAGGACTGGAATTACACCTTTTGATCTCAGTAAGGTGATAGAAAGTTTCATTCGACATGAGGAATCACTTCCCAGAGAATTGAGGCGACATCTGAATTCGTTGGAAGAGCGACTTTTGGAGAGCATGGTGTGGGAAAAGGGATCCTCAATGTACAATTCTCTGACCGTTGCAAGACCATCCCTTTCTGCTGAAATAAACCGTCTTGGGTTGTTGGCAGAACCAATGCCATCTTTGGATGCAATTGCGATGCATATTAACATGTCATCTGGCGGTTTGCCTCCTGCCCCATCTTTCCAGAAGCACGAACTTTCTTCAGGTCAAAATGTAGATATTCGTTCACCGAAGAGACTTTGCACTGAATATCGAAGTGTGTTGGTAGAGCGGAATTCCTTCACATCACCAGTGAAGGATCGGCTTCTGGCCTTCAGTAACCTCAAGTCGAAGTTACCACCACCTGCCTTGCAATCTGCATTTGCCAGGGTCCTACAATTTTATGCTTATTGCAGTCCAACAAAGCCCAATCCAGGTAGTGGAGGGGAAACGTGTGCAGAAACTGCAATCAATGTATTTTTTGGAAAGATTGTAAAGTTAGCTGCTGTCAGAATCAATGGTATGGTTGATAGGCTACAATTGTCACAACAGATAAGGGAGAATGTATACTGTCTTTTCCAACAGATCCTTAGTCAGCGGACAGCTCTGTTCTTCAATCGCCATATTGACCAGATCATCCTTTGTTGTTTCTATGGACTTGCAAAGATTTCCCAGCTCAACCTAACTTTCAGAGAAATCATTTGCAACTATAGAAAACAGCCACATTGTAAACCTCAAGTTTTTCGTAGTGTTTTTGTTGACCGATCCTCAGCTCGCCACAATGGGAAAGCTTGGCAGGATCATGTTGATATAATCACATTCTACAATGAAATTTTCATTCCTGCTGTAAAGACTCTACTGGGTGAGCCTGCCCTCGTGGTAAAAGCTCAAAAAACTAACCAGGTGTCAGATGCTAACAACAGTAATGAGGGTGAATGTCCTGGATCGCCCAAGGTATCATTTCCCAGCATTCCTGATATGTCCCCAAAGAAGGTATCTGCGGCACATAATATATATGTCTCTCCTTTGCGGTCATCAAAGGTATTTATCGGTAACCGGAAGCTCAGAAATACGCTTAAATTTGAGGATGGTGATATTGGGTTGGTTAGTGACTCTCTAGTTGCCCACAGCCTTTACCTCCAGAACGGGAGCTGCGGATCCTCGTCAGGTGCAACATTGAAATCCGAGCAACCTGAG

Network for GWHGAAZE013758

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01858.18	RB_A	109	310	1.30E-59
PF01857.21	RB_B	442	570	8.60E-41

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	RB

KEGG pathway

KO	Enzyme	pathway	mapID
K04681	RBL1	TGF-beta signaling pathway	map04350
		Cell cycle	map04110
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name
GO:0051726	biological_process	regulation of cell cycle
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.588
	SRR3591706	second leaf	27.800
	SRR3591707	mature leaf	26.451
	SRR3591708	Shoot apex	43.022
	SRR3591709	Stem	42.130
	SRR3591710	White floral bud	29.030
	SRR3591711	White flower	36.360
	SRR3591712	Green floral bud	35.309
	SRR3591713	Yellow flower	27.915
SRP173429	SRR8316895	Juvenile bud stage	24.846
	SRR8316896	Juvenile bud stage	33.210
	SRR8316897	Juvenile bud stage	15.165
	SRR8316894	Third green stage	14.330
	SRR8316900	Third green stage	33.268
	SRR8316901	Third green stage	32.145
	SRR8316898	Complete white stage	11.305
	SRR8316899	Complete white stage	44.331
	SRR8316903	Complete white stage	23.382
	SRR8316902	Silver flowering stage	13.769
	SRR8316904	Silver flowering stage	22.112
	SRR8316905	Silver flowering stage	9.828
	SRR8316906	Gold flowering stage	32.021
	SRR8316907	Gold flowering stage	30.762
	SRR8316908	Gold flowering stage	30.631
SRP132670	SRR6706286	Control	28.981
	SRR6706287	Light intensity 50%	32.601
	SRR6706288	Light intensity 20%	31.495
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.103
	CNS0095593	Slightly white alabastrum(diploid) 2	20.773
	CNS0095594	Slightly white alabastrum(diploid) 3	16.845
	CNS0095595	Whole white alabastrum(diploid) 2	16.878
	CNS0095596	Whole white alabastrum(diploid) 3	15.704
	CNS0095597	Whole white alabastrum(diploid) 4	15.752
	CNS0095598	Silvery flower (diploied) 1	24.820
	CNS0095599	Silvery flower (diploied) 2	22.503
	CNS0095600	Silvery flower (diploied) 3	37.998
	CNS0095601	Golden flower (diploid) 1	25.007
	CNS0095602	Golden flower (diploid) 2	46.705
	CNS0095603	Golden flower (diploid) 3	41.943
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.890
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.420
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.741
	CNS0095610	Silvery flower (diploied) 1	32.772
	CNS0095611	Silvery flower (diploied) 2	37.751
	CNS0095612	Silvery flower (diploied) 3	24.749
	CNS0095613	Golden flower (tetraploid) 1	15.464
	CNS0095614	Golden flower (tetraploid) 2	26.989
	CNS0095615	Golden flower (tetraploid) 3	31.197
CRA001975	CRR073297	Stem 1	43.422
	CRR073298	Stem 2	35.353
	CRR073299	Stem 3	38.634
	CRR073300	Leaf 1	39.151
	CRR073301	Leaf 2	32.554
	CRR073302	Leaf 3	30.583
	CRR073303	Juvenile bud 1	26.507
	CRR073304	Juvenile bud 2	20.929
	CRR073305	Juvenile bud 3	45.419
	CRR073306	Third green 1	10.720
	CRR073307	Third green 2	10.218
	CRR073308	Third green 3	12.389
	CRR073309	Second white 1	16.359
	CRR073310	Second white 2	15.698
	CRR073311	Second white 3	16.881
	CRR073312	Silver flowering 1	19.050
	CRR073313	Silver flowering 2	21.964
	CRR073314	Silver flowering 3	17.714
	CRR073315	Gold flowering 1	23.307
	CRR073316	Gold flowering 2	34.739
	CRR073317	Gold flowering 3	30.664
	CRR073318	Tawny withering 1	26.306
	CRR073319	Tawny withering 2	22.188
	CRR073320	Tawny withering 3	29.705