Gene detail

Detail information of GWHGAAZE013803

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07280.1	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068UFF1\|A0A068UFF1_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07280.1}
TAIR10	AT1G20760.1	Calcium-binding EF hand family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	805596	814366	-
GWHAAZE00000004	mRNA	805596	814366	-
GWHAAZE00000004	exon	814220	814366	-
GWHAAZE00000004	exon	811398	812490	-
GWHAAZE00000004	exon	811038	811256	-
GWHAAZE00000004	exon	810732	810949	-
GWHAAZE00000004	exon	809246	809344	-
GWHAAZE00000004	exon	808807	808878	-
GWHAAZE00000004	exon	808556	808670	-
GWHAAZE00000004	exon	807439	807507	-
GWHAAZE00000004	exon	806740	807043	-
GWHAAZE00000004	exon	806542	806626	-
GWHAAZE00000004	exon	805596	806027	-
GWHAAZE00000004	CDS	814220	814366	-
GWHAAZE00000004	CDS	811398	812490	-
GWHAAZE00000004	CDS	811038	811256	-
GWHAAZE00000004	CDS	810732	810949	-
GWHAAZE00000004	CDS	809246	809344	-
GWHAAZE00000004	CDS	808807	808878	-
GWHAAZE00000004	CDS	808556	808670	-
GWHAAZE00000004	CDS	807439	807507	-
GWHAAZE00000004	CDS	806740	807043	-
GWHAAZE00000004	CDS	806542	806626	-
GWHAAZE00000004	CDS	805596	806027	-

Transcript Sequence
>GWHTAAZE013817 ATGGCGGAGGTACAAGGAGGAGCTAATGTTGACCTATTCGATGCCTACTTCCGGAGAGCGGATTTGGATCAGGATGGAAGGATCAGTGGAGCCGAAGCCGTTGCTTTCTTTCAAGGATCCAACTTATCTAAACAAGTACTCGCTCAGATATGGATGCATGCTGATCCAAGAAGTACCGGATACCTTGGTCGTGCTGAATTTTATAATGCTCTTAAACTTGTAACTGTTGCCCAGAGTAAGCGAGAATTAACACCAGATATTGTAAAGGCAGCATTATATGGTCCTGCTTCGACTAAAATCCCTGCTCCACAGATTAATCTTGCAGCCACCCCTGCACCTCAGGTGAACTCAATGGCCCCTGCTCCTGCACCACAGATGGGTGCACTAGCACCAACGGCTTCTCAAAATTTTGGTTTCAGAGGACAAGTACCTCCAAATGCTGGTATGAATCAGCAGTATTACACATCTCAAGGGAATCAGTCAATGAGGCCACCCCTTCCCATGTCTTCTGGCACTGCTTCACGTCCGCCGCAGGGTGGTGCTGGTTCAGATTTCCCCCGGGGAGGTAGTATGGTGGGCCCTGACCTTTCAAACTCCAACAACCCTGGCAATTGGGTTGGTAGTAGAACTAGCGGTGCTCCTTCGCAAGTCCCAAACAGAGGAATTAGTCCTTCGGTGCCCTCAGCTGCACCAAAACCACAAGATCCACTTTCAACAGCTTCTTCAATGGTAGCCACGAGTCCTAAAGCATCAGTCGGTTCAGGAAATGGATTTTCTTCTGACCCAGTGTTTGGAGGTGATATATTTTCTGCCACTCAGTCTGTAGCGAAGCAGAATTCATCTGCTCCAACTTATTCTGTAGGTATTGCACCCATCTCTTCAGCCACTCTTCCTGTAACTACAGGGCCCCAATCTCCTGTGAAGCCCAATCCACTTGACTCATTACAGAGTTCTTTCTCGAGGCAATCTACTGGGGGGCAGCTGTGGCAAACCCAGTCACAGTTGAAACAAAATCAACAGGTTTCATCAACTCAAAATACCTCCTCGCTGGGGTCCTCTGGAATTTCTATTGAGGGTGGAAATTCTACTTCCAACCAGTCCCAACATAGATGGCCTAAAATGACACGAGCCGGTGTTCAAAAGTATACTAAAGTATTTGTGGAAGTAGACAGTGACAGAGATGGGAAGATCACTGGCGAACAGGCACGTAATTTGTTCTTGAGTTGGAGACTTCCAAGAGAGGTATTGAAGCAGGTTTGGGACTTATCTGATCAAGATAATGATAGCATGCTTTCCTTGAGGGAGTTTTGTATATCCCTTTATCTAATGGAACGACATAGGGAAGGCCATCCTCTTCCGCCAGTGCTCCCTAGTAGTATTTTGCTCGACGAGACTTTGTTGTCCCTGGCAGGTCCACCCAATGCTTCTTACGGAACTGCTGCCTGGGGACCCACTCCTGGTGTGAGATCACAGCAAGGAATGCCCGATCCCCCTCGAGCGACACCCACTGGTTTAATGCCTTCAATGCAGGGAACATTTCAGAATGATGGCACAATGCTATTTAATCAGCAGAAGACTAGAGTGCCATCAATGGAAAACTCTCATATGAACCAGTTCAGTAATGGTGAACCAAATCTAGTGGATTCAAAGTCTCAGCAAACAGAAGACATGGAAAGGGCCGAGTTACTAGGTAAGAAATATGAAGAGAAGTACAAGCAGGTTGCTGAAATTGCCTCTAAATTAACTATTGAAGAGGCCTCATTTCGTGATGTTCAGGAGCGAAAGACAGAGTTGAATCAGGCAATCGTAAAAATGGAACAAGGTGGCAGTGCAGATGGTATTCTTCAGGTTCGTGCTGATCGTATACAGTCAGATCTCGAGGAGCTATTGAAGGCTTTAACTGAACGTTGCAAGAAACATGGGTTGCACGTTAAGTCAACTGTACTAATTGAACTTCCTCTTGGCTGGCAACCTGGAATCCCAGAGATATCAGCTGTTTGGGATGAAGAATGGGATAAGTTTGAAGACGAAGGATTTTCATTTGATGTTGCTGTGCCCACAAATGGCAAATCCACATCTTTTCAGAAAGAATATTCTTCTCCACTTGATAGTTATTCCCCAGATTCATTTTCCAATGCTGATGGCAAATCAGAGAAATCTTTCAGCAAAGCCGAGCGTGATCTCGAGACTGAATCAGCCTACATGCACAGCGAAGATGAATCAACAAAAAGCCCCCCAGGTAGTCCAGCAAGGCAAACAACATTTGAAAGCCCATCAAAGGAATATTCAGATAATCATTTTGGAAAGAGCTTTGAAGCAGACACTGAAACTCAGAGAAGCTTTGATGAACCGACCTGGGGTACCTTTGACAATAATGAGGATATAGACTCGGTATGGGGATTCAGTACCTCTAATTCTAAGGACTTGGATCACGAGAAGCAGGAAGGAAAGTATTTCTTTGGATCAAGCGGCTTTGGGATGAGCCCTACAAAAACAGAATCCCCGCAAGCATCATATAACAAGAGCCCATTTACATTTGAGGAATCAGTTCCTAGCACTCCCCTTTCTAGAGCTGGCAACTCCCCACCAAGATACAGTGTTGCGTCCGGGGATTCCTTCTTTGACAATGCTGGAAGGTATGATTCTTTCAGTTCGAGGGACCAGGGTGGGTTTTCTCCCCGACAAGAAACCTTGACAAGGTTTGATTCAATAAACAGCACTAGGGGATTTGACAATAGCCATGGCTTCTCTTTTGATGACTCTGACCCGTTCGGCTCAAGTGGTCCGTTTAAGGTTTCATCTGAGAATCATAGCCCAAGAAAAGGTTCTTCTGATAAATGGGGTGCTTTCTAG

Network for GWHGAAZE013803

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13202.7	EF-hand_5	14	32	0.0031
PF12763.8	EF-hand_4	372	443	1.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12472	EPS15	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	42.467
	SRR3591706	second leaf	22.171
	SRR3591707	mature leaf	21.372
	SRR3591708	Shoot apex	27.806
	SRR3591709	Stem	40.959
	SRR3591710	White floral bud	44.439
	SRR3591711	White flower	42.820
	SRR3591712	Green floral bud	42.094
	SRR3591713	Yellow flower	41.282
SRP173429	SRR8316895	Juvenile bud stage	18.806
	SRR8316896	Juvenile bud stage	28.693
	SRR8316897	Juvenile bud stage	14.875
	SRR8316894	Third green stage	11.753
	SRR8316900	Third green stage	29.081
	SRR8316901	Third green stage	30.871
	SRR8316898	Complete white stage	13.313
	SRR8316899	Complete white stage	38.112
	SRR8316903	Complete white stage	31.870
	SRR8316902	Silver flowering stage	21.912
	SRR8316904	Silver flowering stage	31.153
	SRR8316905	Silver flowering stage	14.910
	SRR8316906	Gold flowering stage	55.810
	SRR8316907	Gold flowering stage	56.299
	SRR8316908	Gold flowering stage	54.267
SRP132670	SRR6706286	Control	32.504
	SRR6706287	Light intensity 50%	35.517
	SRR6706288	Light intensity 20%	35.815
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.451
	CNS0095593	Slightly white alabastrum(diploid) 2	21.197
	CNS0095594	Slightly white alabastrum(diploid) 3	18.124
	CNS0095595	Whole white alabastrum(diploid) 2	17.326
	CNS0095596	Whole white alabastrum(diploid) 3	13.884
	CNS0095597	Whole white alabastrum(diploid) 4	17.064
	CNS0095598	Silvery flower (diploied) 1	22.396
	CNS0095599	Silvery flower (diploied) 2	21.582
	CNS0095600	Silvery flower (diploied) 3	45.553
	CNS0095601	Golden flower (diploid) 1	20.987
	CNS0095602	Golden flower (diploid) 2	39.524
	CNS0095603	Golden flower (diploid) 3	40.666
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.163
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.351
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.256
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.456
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.763
	CNS0095609	Whole white alabastrum(tetraploid) 3	29.675
	CNS0095610	Silvery flower (diploied) 1	43.435
	CNS0095611	Silvery flower (diploied) 2	41.583
	CNS0095612	Silvery flower (diploied) 3	45.016
	CNS0095613	Golden flower (tetraploid) 1	24.704
	CNS0095614	Golden flower (tetraploid) 2	36.902
	CNS0095615	Golden flower (tetraploid) 3	49.455
CRA001975	CRR073297	Stem 1	32.482
	CRR073298	Stem 2	28.635
	CRR073299	Stem 3	25.477
	CRR073300	Leaf 1	35.197
	CRR073301	Leaf 2	31.756
	CRR073302	Leaf 3	20.813
	CRR073303	Juvenile bud 1	27.110
	CRR073304	Juvenile bud 2	23.228
	CRR073305	Juvenile bud 3	38.838
	CRR073306	Third green 1	22.517
	CRR073307	Third green 2	16.299
	CRR073308	Third green 3	22.261
	CRR073309	Second white 1	24.163
	CRR073310	Second white 2	31.004
	CRR073311	Second white 3	33.202
	CRR073312	Silver flowering 1	27.705
	CRR073313	Silver flowering 2	31.546
	CRR073314	Silver flowering 3	25.069
	CRR073315	Gold flowering 1	10.560
	CRR073316	Gold flowering 2	15.084
	CRR073317	Gold flowering 3	11.212
	CRR073318	Tawny withering 1	25.177
	CRR073319	Tawny withering 2	21.662
	CRR073320	Tawny withering 3	27.571