Gene detail

Detail information of GWHGAAZE013813

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011100482.1	0	PREDICTED: serine/threonine-protein kinase CDL1 [Sesamum indicum]
Swissprot	tr\|Q9FE20\|PBS1_ARATH	2E-142	Serine/threonine-protein kinase PBS1
trEMBL	tr\|A0A068UI39\|A0A068UI39_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07283.1}
TAIR10	AT1G20650.1	1E-121	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	958307	961317	+
GWHAAZE00000004	mRNA	958307	961317	+
GWHAAZE00000004	exon	958307	958430	+
GWHAAZE00000004	exon	958542	958609	+
GWHAAZE00000004	exon	958912	959101	+
GWHAAZE00000004	exon	960363	960754	+
GWHAAZE00000004	exon	960991	961317	+
GWHAAZE00000004	CDS	958307	958430	+
GWHAAZE00000004	CDS	958542	958609	+
GWHAAZE00000004	CDS	958912	959101	+
GWHAAZE00000004	CDS	960363	960754	+
GWHAAZE00000004	CDS	960991	961317	+

Transcript Sequence
>GWHTAAZE013827 ATGACTTGCTTTTCTTGCATGAGTTCTCGCCGAAAGGATGTCACCAATTACGACGAGGATATTACCCTTCAAGCGCCCGATTCTTCTGCAAGTGGGAGGGGGAAAACTTATGGGGAGGCCACTGTGTATGGAAGGAGAACAAGTTCTTTTAAAACAAAAGGGAGGGAAAGTAATAGCAATAAGGGCGGCAATATTGTGGCTATAAAGCAACTCAATCTTCAAGGCCTTCAGGGAAACCAGGAATTCATTGTTGAGGTTCTTATGTTAAGTCTGCTTCATCACCCCAACCTCGTCACCTTACTTGGGTATTGTACCGATGGAGATCAGAGACTCTTGGTTTATGAGTACATGCCGATGGGCAGCTTGGAGACCCACCTTTTTGAGAGAGAACCTGATAAGGAGCCATTGGATTGGACCACAAGACTGAAGATTGCTGTAGGTGCTGCTCGTGGCCTTGAGTATCTTCACTGCACAGCAAATCCACCAGTCATTTACCGTGATCTGAAATCATCAAATATATTATTGGATAAAGACTTCAATCCAAAGCTCTCAGATTTTGGACTTGCCAAACTCGGCCCTGTTGGTGACAACACTCATGTTTCAACCAGAGTTATGGGAACCTATGGATACTGTGCCCCTGATTATGCCATGAGTGGCAGGCTCACTTTGAAATCTGATATCTATAGCTTCGGTGTGGTTCTCTTGGAACTCATCACTGGCCGCAGAGCCATTGACTGCACTAAAAAGCAAGGAGAGCAGAACTTGATTGTTTGGTCTCGTCCTTTTCTGAAGGATCGGAAGAAGTTTGTTCAGTTGGTTGACCCACAGCTGCAAGGACGCTTTCCTGTTCGTTCTTTACACCATGCTGTTGCCATTACCGCAATGTGCCTGCAGGAGCAAGCGCAGTTCCGCCCGCTTATTAGTGATATTGTTGTCGCACTTGAGTACTTAGTCTCTCAAGCTGATAGCTCTGATACTTCTAAGGCTGTTGGACCCTTCACTCCCCCACAACCATCACCTTCAACTTCGCATCGAAGCAGCAGCCTCGTTTCTCAAGGACAATACTTGACAACATATTCTTCTGCTCTTTCAATGCCCTGA

Network for GWHGAAZE013813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	58	313	5.70E-39

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.575
	SRR3591706	second leaf	44.525
	SRR3591707	mature leaf	29.517
	SRR3591708	Shoot apex	43.590
	SRR3591709	Stem	61.441
	SRR3591710	White floral bud	120.426
	SRR3591711	White flower	38.627
	SRR3591712	Green floral bud	100.733
	SRR3591713	Yellow flower	27.957
SRP173429	SRR8316895	Juvenile bud stage	27.917
	SRR8316896	Juvenile bud stage	48.006
	SRR8316897	Juvenile bud stage	23.493
	SRR8316894	Third green stage	22.320
	SRR8316900	Third green stage	72.010
	SRR8316901	Third green stage	74.444
	SRR8316898	Complete white stage	20.440
	SRR8316899	Complete white stage	60.781
	SRR8316903	Complete white stage	29.458
	SRR8316902	Silver flowering stage	24.944
	SRR8316904	Silver flowering stage	29.148
	SRR8316905	Silver flowering stage	13.642
	SRR8316906	Gold flowering stage	42.367
	SRR8316907	Gold flowering stage	41.901
	SRR8316908	Gold flowering stage	39.907
SRP132670	SRR6706286	Control	93.147
	SRR6706287	Light intensity 50%	88.075
	SRR6706288	Light intensity 20%	92.681
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	51.592
	CNS0095593	Slightly white alabastrum(diploid) 2	45.572
	CNS0095594	Slightly white alabastrum(diploid) 3	51.103
	CNS0095595	Whole white alabastrum(diploid) 2	90.592
	CNS0095596	Whole white alabastrum(diploid) 3	103.726
	CNS0095597	Whole white alabastrum(diploid) 4	113.521
	CNS0095598	Silvery flower (diploied) 1	36.148
	CNS0095599	Silvery flower (diploied) 2	44.546
	CNS0095600	Silvery flower (diploied) 3	73.822
	CNS0095601	Golden flower (diploid) 1	48.474
	CNS0095602	Golden flower (diploid) 2	55.823
	CNS0095603	Golden flower (diploid) 3	58.451
	CNS0095604	Slightly white alabastrum(tetraploid) 1	64.014
	CNS0095605	Slightly white alabastrum(tetraploid) 2	69.385
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.513
	CNS0095607	Whole white alabastrum(tetraploid) 1	105.938
	CNS0095608	Whole white alabastrum(tetraploid) 2	119.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.373
	CNS0095610	Silvery flower (diploied) 1	39.809
	CNS0095611	Silvery flower (diploied) 2	57.209
	CNS0095612	Silvery flower (diploied) 3	68.570
	CNS0095613	Golden flower (tetraploid) 1	27.173
	CNS0095614	Golden flower (tetraploid) 2	34.085
	CNS0095615	Golden flower (tetraploid) 3	50.700
CRA001975	CRR073297	Stem 1	88.122
	CRR073298	Stem 2	82.862
	CRR073299	Stem 3	66.276
	CRR073300	Leaf 1	139.969
	CRR073301	Leaf 2	127.137
	CRR073302	Leaf 3	106.443
	CRR073303	Juvenile bud 1	137.747
	CRR073304	Juvenile bud 2	96.956
	CRR073305	Juvenile bud 3	99.131
	CRR073306	Third green 1	120.474
	CRR073307	Third green 2	94.038
	CRR073308	Third green 3	112.477
	CRR073309	Second white 1	79.627
	CRR073310	Second white 2	57.786
	CRR073311	Second white 3	51.344
	CRR073312	Silver flowering 1	74.206
	CRR073313	Silver flowering 2	76.915
	CRR073314	Silver flowering 3	59.504
	CRR073315	Gold flowering 1	54.095
	CRR073316	Gold flowering 2	40.843
	CRR073317	Gold flowering 3	30.342
	CRR073318	Tawny withering 1	82.121
	CRR073319	Tawny withering 2	78.132
	CRR073320	Tawny withering 3	66.721