Gene detail

Detail information of GWHGAAZE013820

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284841.2	PREDICTED: 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1 [Vitis vinifera]
Swissprot	tr\|P30924\|GLGB_SOLTU	1,4-alpha-glucan-branching enzyme
trEMBL	tr\|E0CQR2\|E0CQR2_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18866.3}
TAIR10	AT5G03650.1	starch branching enzyme 2.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1082144	1089640	+
GWHAAZE00000004	mRNA	1082144	1089640	+
GWHAAZE00000004	exon	1082144	1082230	+
GWHAAZE00000004	exon	1083960	1084079	+
GWHAAZE00000004	exon	1084400	1084607	+
GWHAAZE00000004	exon	1085133	1085202	+
GWHAAZE00000004	exon	1085288	1085557	+
GWHAAZE00000004	exon	1085700	1086606	+
GWHAAZE00000004	exon	1086783	1086899	+
GWHAAZE00000004	exon	1087167	1087229	+
GWHAAZE00000004	exon	1087761	1087868	+
GWHAAZE00000004	exon	1088218	1088319	+
GWHAAZE00000004	exon	1088602	1088669	+
GWHAAZE00000004	exon	1088857	1088938	+
GWHAAZE00000004	exon	1089023	1089139	+
GWHAAZE00000004	exon	1089323	1089640	+
GWHAAZE00000004	CDS	1082144	1082230	+
GWHAAZE00000004	CDS	1083960	1084079	+
GWHAAZE00000004	CDS	1084400	1084607	+
GWHAAZE00000004	CDS	1085133	1085202	+
GWHAAZE00000004	CDS	1085288	1085557	+
GWHAAZE00000004	CDS	1085700	1086606	+
GWHAAZE00000004	CDS	1086783	1086899	+
GWHAAZE00000004	CDS	1087167	1087229	+
GWHAAZE00000004	CDS	1087761	1087868	+
GWHAAZE00000004	CDS	1088218	1088319	+
GWHAAZE00000004	CDS	1088602	1088669	+
GWHAAZE00000004	CDS	1088857	1088938	+
GWHAAZE00000004	CDS	1089023	1089139	+
GWHAAZE00000004	CDS	1089323	1089487	+
GWHAAZE00000004	three_prime_UTR	1089488	1089640	+

Transcript Sequence
>GWHTAAZE013834 ATGTATGGTTCTTGGCTTCTTACTTCTAAACCTGCTATTGGGGTTTTAAGCTTAACACCCTTTTCAAGTAAACACACTTCACTTCCGGCTTTCAGAAATAATTGGCCTGTTGCCTCACAACAACAACCTGGAGTTATCTTTGGACCCGGAAAATTGCTTGGGAGCCGCCAATTTCTTCCTCCATCAAGAATCTTAAAGTATGGCAGGGTAGAGCACAGGTCTGCTATCTCGGCTGTTTTGATTGATGACAACGCGATGATGACCACTGGGGAAGATATTGAAAATATTGATATATTGCGCATGGATCCAGGCTTGGAACCATATAAGGATCATTTCAGATATAGAGTGAAGAGATATGTAGATCAGAAAAAGCTCATCGAAAGATACGAAGGCAGCCTTGATAAATTTTCACAAGGCTATTTGAATTTTGGATTTAACAGAGAAGAAGGTGGCATTGTGTATCGCGAGTGGGCCCCTGCTGCGCAGGAAGCACAACTTATCGGGGACTTCAATGGATGGGATGGTTCAAACCACAAGATGGAAAAAAATGAATTTGGGGTATGGAGTATCAAGATTTCTGATTCTGGGGAAAATGCAGCAATTCCTCACAATTCGAGAGTCAAGTTCCGATTCAAGTATGGTGATGGAGTTTGGGTTGATAGAATCCCTGCTTGGATAAAGTATGCCACTGCGGACCCTACAAGATTTGCTGCACCTTATGATGGTGTGTACTGGGATCCGCCACCTTCAGAAAGGTACCAGTTTAAATACCCTCGTCCTTCAAAACCCAAGGCCCCACGGATATATGAGGCTCATGTTGGTATGAGTAGCTCAGAACCCCGTGTAAACTCATACAGAGAGTTTGCGGATAATGTTTTGCCTCGTATCCGAGCAAACAACTATAATACTGTACAGCTGATGGCTGTGATGGAACATTCATACTATGGATCATTTGGATATCATGTTACAAACTTCTTTGCTGTGAGCAGTAGATCTGGAACCCCCGAAGACCTTAAGTATTTAATCGATAAAGCACATAGCTTAGGTTTACAGGTCTTAATGGATATTGTTCACAGCCATGCAAGTAACAATGTCACTGATGGCCTTAATGGCTTCGATGTTGGCCAGATCTCTCAAGATTCTTACTTCCATAACGGGGATCGAGGGTACCATAAGTTATGGGATAGCCGATTGTTCAACTATGCTAATTGGGAAGTTCTCCGTTTCCTTTTATCCAACTTGAGGTGGTGGCTAGATGAATTCAAATTTGACGGGTTTCGATTTGATGGGGTAACTTCAATGTTATATCATCACCATGGAATACACATAGCATTCACAGGGAACTATAATGATTATTTTAGTGAGGCAACAGATACTGATGCTGTGGTTTATTTGATGCTGGCCAATTATTTGATTCATAGTGTTTTGCCAGATGCAACTGTGATTGCAGAAGATGTTTCTGGTATGCCTGGCCTTGGGAGGCATGTATCAGAAGGTGGAATTGGCTTTGATTACCGGCTAGCAATGGCTATACCTGACAAGTGGATTGATTACTTGAAGAACAAGAAAGATGAAGAGTGGTCTATGGAGGAAATATCGTGGAGTTTGACTAATAGGAGATACACTGAAAAGTGTATAGCTTATGCCGAGAGTCATGATCAGTCTATTGTGGGAGACAAGACTATTGCATTTCTCCTAATGGATGAGGAAATGTATAATGGCATGTCTTCTTTGGTGGATGCTTCTCCAACTATCGAGCGAGGGATTGCACTTCACAAGATGATTCACTTCATAACAATGGCATTAGGAGGAGACGGCTACCTTAATTTCATGGGGAATGAGTTTGGCCATCCTGAGTGGATTGACTTCCCCAGAGACGGCAATGATTGGAGTTACGAGAAATGCAGACGCCAGTGGAATCTTGTGGATACAGATCACTTGAGATACCAGTTCATGAATGCATTTGATAGAGCTATGAATTTGCTCGATGAAAAATTCTTGTTCCTCGCATCAACAAAACAGATAGTGAGCAGTGCAAATGAAGACGAAAAGGTTATTATATTTGAACGTGGAGATTTAGTTTTTGTTTTCAACTTTCATCCGGAGAACACATACGATGGGTATAAGGTTGGGTGCGACTTGCCTGGGAAATATAGAGTTGCTCTGGACAGCGATGCATTTGAATTTGGTGGGCATGGAAGAGTTGGGCACGACGTGGATCATTTCACAACACCGGAAGGAATCCCGGGAGTCCCTGAAACAAATTTCAATAACCGTCCCAACTCCTTCAGAGTTCTCTCCCCAGCTCGTACATGTGTGGTTTATTATAGACACGAAGAGGGGTTAGAAGAAATTAGCGACAGCAAGTCAGCTGTTGCTGATGCGGATGAAGATACAGTTGAAGAATCAGTGTTTGTGGAAGATAGTGATGTTGGATCTATCAAGAAAGGAGTAGGTTTACAAGAGGAATCTATGGCAGATTGATTCATTGGACTATATTCTTCTGCTACAGCTCCAATAAAAATTCCACTAGATTTGCCCATAGAGGATTTTCTTGGTGTAAATTTCGAACTCCCCAAAACCAGATGAATGATTGGTCTTTGTACCGGTTGTGCGTGTAGCCACTATGCGTCTTTA

Network for GWHGAAZE013820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.19	CBM_48	143	226	2.60E-19
PF00128.25	Alpha-amylase	313	405	6.00E-11
PF02806.19	Alpha-amylase_C	677	776	2.70E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0005978	biological_process	glycogen biosynthetic process
GO:0003824	molecular_function	catalytic activity
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0043169	molecular_function	cation binding
GO:0003844	molecular_function	1,4-alpha-glucan branching enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	44.913
	SRR3591706	second leaf	19.704
	SRR3591707	mature leaf	25.796
	SRR3591708	Shoot apex	28.929
	SRR3591709	Stem	52.679
	SRR3591710	White floral bud	29.151
	SRR3591711	White flower	24.091
	SRR3591712	Green floral bud	34.978
	SRR3591713	Yellow flower	25.840
SRP173429	SRR8316895	Juvenile bud stage	16.085
	SRR8316896	Juvenile bud stage	20.285
	SRR8316897	Juvenile bud stage	10.492
	SRR8316894	Third green stage	8.548
	SRR8316900	Third green stage	34.519
	SRR8316901	Third green stage	29.070
	SRR8316898	Complete white stage	10.017
	SRR8316899	Complete white stage	35.268
	SRR8316903	Complete white stage	15.170
	SRR8316902	Silver flowering stage	10.830
	SRR8316904	Silver flowering stage	14.210
	SRR8316905	Silver flowering stage	7.406
	SRR8316906	Gold flowering stage	26.163
	SRR8316907	Gold flowering stage	18.758
	SRR8316908	Gold flowering stage	19.930
SRP132670	SRR6706286	Control	33.670
	SRR6706287	Light intensity 50%	35.131
	SRR6706288	Light intensity 20%	38.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.599
	CNS0095593	Slightly white alabastrum(diploid) 2	18.599
	CNS0095594	Slightly white alabastrum(diploid) 3	16.323
	CNS0095595	Whole white alabastrum(diploid) 2	16.553
	CNS0095596	Whole white alabastrum(diploid) 3	13.464
	CNS0095597	Whole white alabastrum(diploid) 4	15.472
	CNS0095598	Silvery flower (diploied) 1	17.906
	CNS0095599	Silvery flower (diploied) 2	18.513
	CNS0095600	Silvery flower (diploied) 3	26.599
	CNS0095601	Golden flower (diploid) 1	15.065
	CNS0095602	Golden flower (diploid) 2	22.176
	CNS0095603	Golden flower (diploid) 3	23.896
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.299
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.588
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.913
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.596
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.779
	CNS0095610	Silvery flower (diploied) 1	23.986
	CNS0095611	Silvery flower (diploied) 2	29.884
	CNS0095612	Silvery flower (diploied) 3	23.510
	CNS0095613	Golden flower (tetraploid) 1	11.153
	CNS0095614	Golden flower (tetraploid) 2	17.259
	CNS0095615	Golden flower (tetraploid) 3	8.614
CRA001975	CRR073297	Stem 1	22.005
	CRR073298	Stem 2	21.285
	CRR073299	Stem 3	18.805
	CRR073300	Leaf 1	27.657
	CRR073301	Leaf 2	23.478
	CRR073302	Leaf 3	20.694
	CRR073303	Juvenile bud 1	27.214
	CRR073304	Juvenile bud 2	19.955
	CRR073305	Juvenile bud 3	27.584
	CRR073306	Third green 1	13.319
	CRR073307	Third green 2	7.523
	CRR073308	Third green 3	9.686
	CRR073309	Second white 1	13.013
	CRR073310	Second white 2	12.085
	CRR073311	Second white 3	11.421
	CRR073312	Silver flowering 1	11.133
	CRR073313	Silver flowering 2	8.014
	CRR073314	Silver flowering 3	8.923
	CRR073315	Gold flowering 1	18.894
	CRR073316	Gold flowering 2	32.552
	CRR073317	Gold flowering 3	15.369
	CRR073318	Tawny withering 1	21.144
	CRR073319	Tawny withering 2	20.532
	CRR073320	Tawny withering 3	27.434