Gene detail

Detail information of GWHGAAZE013857

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002284764.2	PREDICTED: phospholipase D delta-like [Vitis vinifera]
Swissprot	tr\|Q9C5Y0\|PLDD1_ARATH	Phospholipase D delta
trEMBL	tr\|F6H0D4\|F6H0D4_VITVI	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}
TAIR10	AT4G35790.2	phospholipase D delta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	1669233	1674365	-
GWHAAZE00000004	mRNA	1669233	1674365	-
GWHAAZE00000004	exon	1673445	1674365	-
GWHAAZE00000004	exon	1673260	1673350	-
GWHAAZE00000004	exon	1672168	1672307	-
GWHAAZE00000004	exon	1671626	1671907	-
GWHAAZE00000004	exon	1671460	1671528	-
GWHAAZE00000004	exon	1671159	1671306	-
GWHAAZE00000004	exon	1670848	1670996	-
GWHAAZE00000004	exon	1670303	1670473	-
GWHAAZE00000004	exon	1669911	1670111	-
GWHAAZE00000004	exon	1669233	1669827	-
GWHAAZE00000004	CDS	1673445	1674365	-
GWHAAZE00000004	CDS	1673260	1673350	-
GWHAAZE00000004	CDS	1672168	1672307	-
GWHAAZE00000004	CDS	1671626	1671907	-
GWHAAZE00000004	CDS	1671460	1671528	-
GWHAAZE00000004	CDS	1671159	1671306	-
GWHAAZE00000004	CDS	1670848	1670996	-
GWHAAZE00000004	CDS	1670303	1670473	-
GWHAAZE00000004	CDS	1669911	1670111	-
GWHAAZE00000004	CDS	1669534	1669827	-
GWHAAZE00000004	three_prime_UTR	1669233	1669533	-

Transcript Sequence
>GWHTAAZE013871 ATGTCCAACGTCATCTCAGATTCAGATACAATCATTTATCTTCACGGAGAACTCGACTTAAAAATTCTCGGAGCTCGTCGCTTACCAAACATGGACCTAGTCTCCGAGCGTCTCCGTCGATGCTTCACTGCATTCGACGTTTGCCGGAAACCTTTCTCCACCGCCGCTCGAAGCCGTCAGCACCTCCACAAGATCATCACCAGCGATCCTTACGTCACCGTTTGCCTCGCCGGTGCCACAGTGGCCCGCACGCGCGTTATCTCCAACTCCGAGGAGCCTGTCTGGAACGAGAACTTCAAAATTCCTCTGGCTCACCCGGTGTCTCTGGTCGAGTTCCAGGTCAAAGACAACGACGTATTCGGCGCTGATCTCATCGGAATCGCCACCGTCTCCGCTCTAAAAATTATGTCAGGCGAATTCATTGACGATTGGTTTCCGATACTTGGGCCTCACGGAAAGCCGGCGAAACCGGACGCTGCGATCCGGCTCCAAATGAGGTTCACGTCCTGCGATCAGAATCCTCCGAACAATTACTGCATTGCGGCAGATCCGAACCACTATGGAGTAAAGGAGAGTTATTTTCCGGCTAGGGTTGGAGGTTCGGTGACTTTGTATCAGGATGCGCATGTTCCGGATGGAATGCTGCCTGAGATTGAATTGGATGACAAAAAGATATTTACGCATGAGAAGTGCTGGGAGGATATATGTCATGCCATATTAGAGGCTCATCACCTTGTGTACATTGTCGGTTGGTCCATTTACCATAAGGTGAAGCTTGTTAGAGAGCCGAGCAAGCCGTTGCCTAGAGGTTGGAAATTGAATCTTGGGGAGTTGCTCAAGTATAAATCGCAAGAAGGGGTGCGAGTTCTAATGCTGGTTTGGGATGATAAGACTTCCCACAGCAAGTTTTTCATTAATACGGAAGGAGTGATGCAAACTCATGACGAAGAGACCAGGAAATTTTTCAAACACTCGTCTGTCCATTGTGTGCTGTCACCACGATATGGAAGCACCGGTGGAAATAACAGGAAGATTTCTGCTTTTATTGGAGGTCTCGATCTCTGTGATGGACGCTATGACACACCAGAGCATCGTTTATTTCGTGATCTCAACACTGTGTTTCAGGATGATTATCATAATCCAACGTTTTCTGCAGGAACAAAGGGTCCGAGACAACCCTGGCATGATTTACATTGCAAAATTGAAGGGCCTGCCGCATATGATGTGCTAAAAAACTTTGAGCAGAGGTGGAAAAAAGCTTCAAAATGGTCCGAGTTTGGACGAAAGTTCAAAAGAATATCTCATTGGCATGACGATGCTTTACTAAAGATAGAACGCATTTCATGGATACTTAGTCCTTCATCATCTATTCAGAGTAATGATCCTATGTTGTGGGTTTCCAAGGAAGATGATCCTGAAAACTGGCATGTTCAGATTTTTCGATCTATTGATTCTGGTTCTCTGAAAGGATTTCCCAAAGATGTACATTTAGCTGAGGCCGAGAATTTAGTCTGTGCAAAAAATCTGGTGGTTGATAAGAGTATTCAAACAGCATATGTTCAGGCCATAAGATCTGCCCAGCACTTCATATATATTGAGAATCAATATTTTATTGGATCATCATATGGATGGGCCTCCCATAGAGACGCAGGAGCTGATAATCTAATACCAATGGAGCTGGCATTAAAGATTGCAAGTAAGATTAGAGCAAAAGAGAAATTTGCTGTCTATATTATCATCCCAATGTGGCCTGAAGGTGTGCCCTCTTCGGCCTCGGTCCAAGAAATTCTATTTTGGCAGGGACAAACAATGCAAATGATGTATGAAATTATTGCTAAAGAGCTGAAATCTGCAGATCTTGAGAATTCTCATCCACAAGACTACCTAAATTTCTACTGTCTTGGTAATCGAGAAGAATGGGATGAAGAGGCTGCCTCAAATTGCAGTCAAACTTCCTGTAAAGGCAAGACGGTCTCAGCTTCCCTAAAGTTTGGACGGTTTATGATCTATGTACATGCGAAGGGAATGATTGTGGATGATGAATATGTGATATTGGGGTCGGCAAATATTAACCAAAGATCAATGGCCGGTTCAAGAGACACAGAGATAGCCATGGGTGCATATCAACCCCATCACACCTGGGCTAAGAAGAAACGACACCCGCGTGGCCAGATATATGGATACAGAATGTCACTGTGGGCAGAGCACTTGGGGAATATAGAAGAATGCTTCAAAGAACCAGAGAGTGAAACTTGTGTGAAGAGTGTTAATGAGATTGCAGAAGAAAACTGGAAGAATTTCACAGCAGGGGAGTTCACTCCATTGCAAGGGCATCTTCTAAAGTACCCAGTCGCGGTAGATGCCAGTGGGAAGGTAACCCCCTTACCGGGACATGAACATTTCCCGGATTTTGGTGGTAAGGTGGTCGGAGCTCCCACCACCCTACCTAATGCTTTGACCACATAATTTTTAAGGTCACGCCTAGGTTTGGCCATGTATATATTAAATTAAGCCTTTTAGCCACTTCTTATGTCCATAAAATTGTTGTGTTTGGTGACACAAGCATGGTTGTATACTTGGGCAATCGCTTATTGTAGTGTAATTGTATGTGCAAGCGTTAATTGTATGTTGTGCTGCTGTCCACTTTCTTCTGAGTATAGAAAGGAAAAAAAAAATTACTTTCTTTGTATGGTGTGATTATATACAATTGTATTTGTATTCTAATAGTTCTATTGTGTAAAAAGCCTGATTTATTGTGCATGGCCAA

Network for GWHGAAZE013857

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.31	C2	16	147	7.50E-24
PF13091.7	PLDc_2	520	703	1.20E-08
PF12357.9	PLD_C	741	811	3.00E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01115	PLD1_2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Ras signaling pathway	map04014
		Phospholipase D signaling pathway	map04072
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		Endocytosis	map04144
		Fc gamma R-mediated phagocytosis	map04666
		GnRH signaling pathway	map04912
		Parathyroid hormone synthesis, secretion and action	map04928
		Glutamatergic synapse	map04724

Gene Ontology

GO term	Ontology	Name
GO:0046470	biological_process	phosphatidylcholine metabolic process
GO:0016020	cellular_component	membrane
GO:0004630	molecular_function	phospholipase D activity
GO:0005509	molecular_function	calcium ion binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.323
	SRR3591706	second leaf	3.642
	SRR3591707	mature leaf	0.503
	SRR3591708	Shoot apex	3.783
	SRR3591709	Stem	44.685
	SRR3591710	White floral bud	21.225
	SRR3591711	White flower	1.779
	SRR3591712	Green floral bud	14.622
	SRR3591713	Yellow flower	2.172
SRP173429	SRR8316895	Juvenile bud stage	10.553
	SRR8316896	Juvenile bud stage	8.604
	SRR8316897	Juvenile bud stage	4.085
	SRR8316894	Third green stage	2.039
	SRR8316900	Third green stage	6.925
	SRR8316901	Third green stage	6.354
	SRR8316898	Complete white stage	0.701
	SRR8316899	Complete white stage	0.358
	SRR8316903	Complete white stage	1.160
	SRR8316902	Silver flowering stage	1.671
	SRR8316904	Silver flowering stage	2.035
	SRR8316905	Silver flowering stage	1.186
	SRR8316906	Gold flowering stage	4.749
	SRR8316907	Gold flowering stage	5.358
	SRR8316908	Gold flowering stage	3.845
SRP132670	SRR6706286	Control	5.496
	SRR6706287	Light intensity 50%	6.412
	SRR6706288	Light intensity 20%	6.278
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.211
	CNS0095593	Slightly white alabastrum(diploid) 2	3.082
	CNS0095594	Slightly white alabastrum(diploid) 3	5.355
	CNS0095595	Whole white alabastrum(diploid) 2	10.143
	CNS0095596	Whole white alabastrum(diploid) 3	12.587
	CNS0095597	Whole white alabastrum(diploid) 4	14.227
	CNS0095598	Silvery flower (diploied) 1	0.707
	CNS0095599	Silvery flower (diploied) 2	1.400
	CNS0095600	Silvery flower (diploied) 3	1.073
	CNS0095601	Golden flower (diploid) 1	0.718
	CNS0095602	Golden flower (diploid) 2	1.049
	CNS0095603	Golden flower (diploid) 3	0.796
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.283
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.576
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	24.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.007
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.752
	CNS0095610	Silvery flower (diploied) 1	4.292
	CNS0095611	Silvery flower (diploied) 2	5.363
	CNS0095612	Silvery flower (diploied) 3	25.407
	CNS0095613	Golden flower (tetraploid) 1	7.705
	CNS0095614	Golden flower (tetraploid) 2	4.774
	CNS0095615	Golden flower (tetraploid) 3	14.169
CRA001975	CRR073297	Stem 1	11.950
	CRR073298	Stem 2	5.638
	CRR073299	Stem 3	4.374
	CRR073300	Leaf 1	6.959
	CRR073301	Leaf 2	4.137
	CRR073302	Leaf 3	2.259
	CRR073303	Juvenile bud 1	4.942
	CRR073304	Juvenile bud 2	2.900
	CRR073305	Juvenile bud 3	0.880
	CRR073306	Third green 1	4.912
	CRR073307	Third green 2	3.678
	CRR073308	Third green 3	4.204
	CRR073309	Second white 1	1.656
	CRR073310	Second white 2	2.123
	CRR073311	Second white 3	5.384
	CRR073312	Silver flowering 1	5.016
	CRR073313	Silver flowering 2	5.388
	CRR073314	Silver flowering 3	5.251
	CRR073315	Gold flowering 1	2.976
	CRR073316	Gold flowering 2	0.948
	CRR073317	Gold flowering 3	1.057
	CRR073318	Tawny withering 1	5.984
	CRR073319	Tawny withering 2	6.163
	CRR073320	Tawny withering 3	9.306