Gene detail

Detail information of GWHGAAZE013968

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP07489.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|P55242\|GLGL2_SOLTU	Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|A0A068UGZ6\|A0A068UGZ6_COFCA	Glucose-1-phosphate adenylyltransferase {ECO:0000256\|RuleBase:RU003565}
TAIR10	AT1G27680.1	ADPGLC-PPase large subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	3676803	3680177	+
GWHAAZE00000004	mRNA	3676803	3680177	+
GWHAAZE00000004	exon	3676803	3677027	+
GWHAAZE00000004	exon	3677136	3677273	+
GWHAAZE00000004	exon	3677442	3677615	+
GWHAAZE00000004	exon	3677879	3677971	+
GWHAAZE00000004	exon	3678064	3678147	+
GWHAAZE00000004	exon	3678255	3678310	+
GWHAAZE00000004	exon	3678447	3678540	+
GWHAAZE00000004	exon	3678717	3678902	+
GWHAAZE00000004	exon	3679014	3679094	+
GWHAAZE00000004	exon	3679190	3679276	+
GWHAAZE00000004	exon	3679357	3679461	+
GWHAAZE00000004	exon	3679628	3679734	+
GWHAAZE00000004	exon	3679896	3679956	+
GWHAAZE00000004	exon	3680076	3680177	+
GWHAAZE00000004	CDS	3676803	3677027	+
GWHAAZE00000004	CDS	3677136	3677273	+
GWHAAZE00000004	CDS	3677442	3677615	+
GWHAAZE00000004	CDS	3677879	3677971	+
GWHAAZE00000004	CDS	3678064	3678147	+
GWHAAZE00000004	CDS	3678255	3678310	+
GWHAAZE00000004	CDS	3678447	3678540	+
GWHAAZE00000004	CDS	3678717	3678902	+
GWHAAZE00000004	CDS	3679014	3679094	+
GWHAAZE00000004	CDS	3679190	3679276	+
GWHAAZE00000004	CDS	3679357	3679461	+
GWHAAZE00000004	CDS	3679628	3679734	+
GWHAAZE00000004	CDS	3679896	3679956	+
GWHAAZE00000004	CDS	3680076	3680177	+

Transcript Sequence
>GWHTAAZE013982 ATGGATTCTTGCTGTGCCACCATGAAGACTAATGTTAACCCAATGAAAGTTAGCAAGGGGTTTTTTAATTATGGAGATAGTGGGTTCTTGGGAAAGAACATCAACAACAGGGCTTTTGGCATTCAGTGGAACAAGAAGAGTCTAACAACTCAAAACAGGGCTAGAAAGATTAAACCTGGGTTTGCATTCTCAGTCCTTACATCAGATATTAACGAAGAGATCGTGGAGTATCCATGCGAGACATTTGAGGCACCAGAATTTCAGAATCCAGAGGCAGATCCGAAAACAGTAGCATCCATCATCCTTGGTGGAGGTGCCGGGACGCGCCTCTTTCCCCTTACCAGCAGAAGAGCTAAACCAGCTGTCCCAATTGGAGGGTGTTACAGGCTAATTGATGTCCCAATGAGTAACTGCATCAACAGTGGCATTACAAAGATTTTTATCCTAACCCAGTTTAATTCTTTTTCCCTCAATCGGCACTTGGCTCGAACATATAACTTGGGAAATGGCGTCAATTTTGGGGATGGATTCGTGGAGGTTCTGGCTGCCACTCAAACACCAGGAGAAGCTGGAAAGAGGTGGTTCCAAGGAACTGCAGATGCTGTGCGGCAGTTTACATGGTTGTTTGAGGACGCGAAGAACAAGAATGTTGAGCACATATTGATTCTGTCTGGGGACCATCTTTACCGAATGGACTATATGAACTTTGTTCAGAAGCATATTGACACAAATGCTGATATTACAGTATCATGCATACCCATGGATGATAGCCGTGCTTCAGACTATGGGTTGATGAAGATTGACGATAGGGGCCGCATTATTCACTTTGCTGAGAAACCAAAGGGCCCCGCTCTACAAGCAATGCAAGTTGATACCTCTCTTCTCGGACTGACCGAGCAAGATGCATTAAAGTATCCTTATATTGCTTCAATGGGAGTCTATGTATTTAGAACTGATGTATTACTCAAGCTTCTGAAGTGGAAGTATCCTTCATGCAATGATTTTGGATCTGAAATTATTCCTTCTGCCGTGAAAGATCACAATGTCCAAGCTTACTTGTTTAGTGACTACTGGGAGGACATTGGAACAATTAAATCCTTCTTTGATGCCAGCTTGGCCCTTACAAAACAGCCTCCAAAGTTCGACTTTAATGACCCAAAGACTCCTTTTTTTACCTCTCCCAGATTCTTGCCACCTACTAAAGTTGAAAAGTGCAAGATTGTGGACGCAATAATTTCACATGGCTGCTTCTTACGAGAATGTAGTGTCGAACACACTATAGTTGGTGTCCGCTCTCGCTTAGATTTTGGCGTCGAGCTTAAGGATACCATGATGATGGGTGCAGACTATTATCAAACTGAAGCAGAAATTGCGTCTCTGCTAGCAGAGGGAAAGGTTCCAATTGGTGTTGGACAGAACACCAAAATAAGGAATTGCATAATTGACAAAAATGCGAAGATAGGAAAAGATGTGGTTGTCGCTAACAAAGATGGTGTTGAAGAAGCAGATAAATCAGATCAAGGATTTTATATTAGGTCTGGGATCACAGTCATACTGAAGAACGCAACAATTACGGACGGAATGGTCATATAA

Network for GWHGAAZE013968

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	99	376	2.80E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00975	glgC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Amino sugar and nucleotide sugar metabolism	map00520
		Biofilm formation - Escherichia coli	map02026

Gene Ontology

GO term	Ontology	Name
GO:0005978	biological_process	glycogen biosynthetic process
GO:0009058	biological_process	biosynthetic process
GO:0008878	molecular_function	glucose-1-phosphate adenylyltransferase activity
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.272
	SRR3591706	second leaf	25.046
	SRR3591707	mature leaf	116.812
	SRR3591708	Shoot apex	11.784
	SRR3591709	Stem	130.750
	SRR3591710	White floral bud	23.163
	SRR3591711	White flower	14.083
	SRR3591712	Green floral bud	23.571
	SRR3591713	Yellow flower	2.314
SRP173429	SRR8316895	Juvenile bud stage	12.771
	SRR8316896	Juvenile bud stage	18.197
	SRR8316897	Juvenile bud stage	10.075
	SRR8316894	Third green stage	10.859
	SRR8316900	Third green stage	40.503
	SRR8316901	Third green stage	61.009
	SRR8316898	Complete white stage	70.252
	SRR8316899	Complete white stage	268.808
	SRR8316903	Complete white stage	107.359
	SRR8316902	Silver flowering stage	2.824
	SRR8316904	Silver flowering stage	8.979
	SRR8316905	Silver flowering stage	3.261
	SRR8316906	Gold flowering stage	4.115
	SRR8316907	Gold flowering stage	3.110
	SRR8316908	Gold flowering stage	7.884
SRP132670	SRR6706286	Control	56.775
	SRR6706287	Light intensity 50%	62.344
	SRR6706288	Light intensity 20%	65.542
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.599
	CNS0095593	Slightly white alabastrum(diploid) 2	30.504
	CNS0095594	Slightly white alabastrum(diploid) 3	13.042
	CNS0095595	Whole white alabastrum(diploid) 2	27.232
	CNS0095596	Whole white alabastrum(diploid) 3	30.920
	CNS0095597	Whole white alabastrum(diploid) 4	54.143
	CNS0095598	Silvery flower (diploied) 1	12.140
	CNS0095599	Silvery flower (diploied) 2	8.188
	CNS0095600	Silvery flower (diploied) 3	8.389
	CNS0095601	Golden flower (diploid) 1	5.608
	CNS0095602	Golden flower (diploid) 2	8.852
	CNS0095603	Golden flower (diploid) 3	8.457
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.085
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.999
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.897
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.780
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.190
	CNS0095610	Silvery flower (diploied) 1	8.584
	CNS0095611	Silvery flower (diploied) 2	5.846
	CNS0095612	Silvery flower (diploied) 3	4.912
	CNS0095613	Golden flower (tetraploid) 1	2.464
	CNS0095614	Golden flower (tetraploid) 2	5.174
	CNS0095615	Golden flower (tetraploid) 3	0.645
CRA001975	CRR073297	Stem 1	13.128
	CRR073298	Stem 2	14.437
	CRR073299	Stem 3	12.713
	CRR073300	Leaf 1	64.767
	CRR073301	Leaf 2	38.354
	CRR073302	Leaf 3	37.935
	CRR073303	Juvenile bud 1	123.241
	CRR073304	Juvenile bud 2	146.227
	CRR073305	Juvenile bud 3	121.774
	CRR073306	Third green 1	14.651
	CRR073307	Third green 2	10.352
	CRR073308	Third green 3	13.576
	CRR073309	Second white 1	2.074
	CRR073310	Second white 2	2.778
	CRR073311	Second white 3	1.107
	CRR073312	Silver flowering 1	0.393
	CRR073313	Silver flowering 2	0.154
	CRR073314	Silver flowering 3	0.545
	CRR073315	Gold flowering 1	10.093
	CRR073316	Gold flowering 2	15.317
	CRR073317	Gold flowering 3	5.257
	CRR073318	Tawny withering 1	11.039
	CRR073319	Tawny withering 2	13.421
	CRR073320	Tawny withering 3	14.512