Gene detail

Detail information of GWHGAAZE014011

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP07561.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q94ID7\|GGPPS_HEVBR	0	Geranylgeranyl pyrophosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A068UGE7\|A0A068UGE7_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07561.1}
TAIR10	AT4G36810.1	7E-140	geranylgeranyl pyrophosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	4341931	4343352	+
GWHAAZE00000004	mRNA	4341931	4343352	+
GWHAAZE00000004	exon	4341931	4342630	+
GWHAAZE00000004	exon	4342928	4343352	+
GWHAAZE00000004	CDS	4341931	4342630	+
GWHAAZE00000004	CDS	4342928	4343352	+

Transcript Sequence
>GWHTAAZE014025 ATGAGATCTCTGAATTTCGTGGATTCATGGGTTCAAACCTGTTCAATCTTCACTCAACAGAGATCCTTGGCTAGATTAATATATAACCCTCTCAAAATAATACCCACTAGTTCAAATTACCCAATTACCACTCTCCACCATAAACCACCACCCATTTCTTCAGTATCTGCTATCCTGACCAAAGAAGAGACTGTAATGGAAGGAGACACCCCAAAAGATCAGACCCAGAATCAAACACCCTTTGATTTCAAAGCTTACATGGTACAAAAGGCTAATTCTGTTAATAAAGCCCTCGACGACGCCGTTTCGATTAAAGACCCACCCACTATACACGAAGCAATGCGATACTCTCTCCTCGCCGGCGGCAAGAGGGTCCGGCCTATGCTATGCATCGCCTCCTGCGATCTTGTCGGCGGCGAAGAACCCAACTCCATGCCGGCGGCCTGCGCGGTGGAGATGATTCACACTATGTCGCTTATTCACGACGACCTCCCCTGTATGGATAACGACGACCTCCGGCGAGGAAAGCCCACCAACCATAAGGTCTTCGGCGAGGATGTTGCTGTCCTCGCCGGCGACTCCCTCCTCGCGTATGCCTTCGAATACATCGCCACCGCAACCACCGGAGTTTCTCCGGTCAGAATCGTGGCGGCGGTCGGAGAACTGGCTAAATCAATCGGCACCGAGGGGTTAGTTGCAGGGCAAGTGGTTGACATAGCATCCACCGGAATGTCAAACGTTGGATTGGACCAACTAGAGTTCATTCATGTGCATAAAACCGCAGCTCTGCTCGAAGCATCGGTAGTTCTTGGGGCTATTTTGGGAGGTGGAAGTAAAGAACAAGTTGAGAAATTGAGGAAATTTGCGAGATGTATTGGGTTGTTATTTCAAGTGGTGGATGATATTCTTGATGTTACAAAGTCTTCTCAAGAATTGGGGAAGACTGCTGGGAAGGATTTGGTGGCTGATAAAATGACCTATCCGAAACTGATGGGACTCGAGAAATCGAAGGAATTTGCAGAGAAATTGAACGAAGATGCTAAGAATCAGCTTTCTGGGTTTGATCCTCATAAAGCAGCTCCATTGATTGCTCTGGCTAATTATATTGCCCATCGGCAGAACTAG

Network for GWHGAAZE014011

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00348.18	polyprenyl_synt	109	346	2.20E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13789	GGPS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.175
	SRR3591706	second leaf	152.981
	SRR3591707	mature leaf	70.492
	SRR3591708	Shoot apex	39.850
	SRR3591709	Stem	20.194
	SRR3591710	White floral bud	7.418
	SRR3591711	White flower	7.092
	SRR3591712	Green floral bud	6.675
	SRR3591713	Yellow flower	2.447
SRP173429	SRR8316895	Juvenile bud stage	5.360
	SRR8316896	Juvenile bud stage	5.850
	SRR8316897	Juvenile bud stage	3.591
	SRR8316894	Third green stage	4.521
	SRR8316900	Third green stage	10.489
	SRR8316901	Third green stage	8.161
	SRR8316898	Complete white stage	1.208
	SRR8316899	Complete white stage	16.790
	SRR8316903	Complete white stage	5.526
	SRR8316902	Silver flowering stage	0.352
	SRR8316904	Silver flowering stage	1.162
	SRR8316905	Silver flowering stage	0.250
	SRR8316906	Gold flowering stage	1.615
	SRR8316907	Gold flowering stage	0.853
	SRR8316908	Gold flowering stage	1.337
SRP132670	SRR6706286	Control	10.490
	SRR6706287	Light intensity 50%	7.567
	SRR6706288	Light intensity 20%	7.094
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.657
	CNS0095593	Slightly white alabastrum(diploid) 2	5.905
	CNS0095594	Slightly white alabastrum(diploid) 3	3.341
	CNS0095595	Whole white alabastrum(diploid) 2	5.302
	CNS0095596	Whole white alabastrum(diploid) 3	5.877
	CNS0095597	Whole white alabastrum(diploid) 4	2.871
	CNS0095598	Silvery flower (diploied) 1	17.346
	CNS0095599	Silvery flower (diploied) 2	9.188
	CNS0095600	Silvery flower (diploied) 3	3.663
	CNS0095601	Golden flower (diploid) 1	7.091
	CNS0095602	Golden flower (diploid) 2	6.767
	CNS0095603	Golden flower (diploid) 3	5.431
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.859
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.266
	CNS0095606	Slightly white alabastrum(tetraploid) 3	13.244
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.489
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.541
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.172
	CNS0095610	Silvery flower (diploied) 1	2.634
	CNS0095611	Silvery flower (diploied) 2	6.250
	CNS0095612	Silvery flower (diploied) 3	2.241
	CNS0095613	Golden flower (tetraploid) 1	0.828
	CNS0095614	Golden flower (tetraploid) 2	3.645
	CNS0095615	Golden flower (tetraploid) 3	1.884
CRA001975	CRR073297	Stem 1	16.308
	CRR073298	Stem 2	16.640
	CRR073299	Stem 3	22.198
	CRR073300	Leaf 1	9.840
	CRR073301	Leaf 2	12.262
	CRR073302	Leaf 3	13.179
	CRR073303	Juvenile bud 1	16.548
	CRR073304	Juvenile bud 2	5.715
	CRR073305	Juvenile bud 3	19.763
	CRR073306	Third green 1	0.487
	CRR073307	Third green 2	1.491
	CRR073308	Third green 3	1.071
	CRR073309	Second white 1	0.276
	CRR073310	Second white 2	0.748
	CRR073311	Second white 3	0.430
	CRR073312	Silver flowering 1	0.263
	CRR073313	Silver flowering 2	0.137
	CRR073314	Silver flowering 3	0.955
	CRR073315	Gold flowering 1	26.122
	CRR073316	Gold flowering 2	31.323
	CRR073317	Gold flowering 3	33.588
	CRR073318	Tawny withering 1	8.499
	CRR073319	Tawny withering 2	4.284
	CRR073320	Tawny withering 3	5.613