Detail information of GWHGAAZE014044


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07597.11.7489E-105unnamed protein product [Coffea canephora]
Swissprottr|Q8RYD1|REM16_ARATH3E-56B3 domain-containing protein REM16
trEMBLtr|A0A068UH60|A0A068UH60_COFCA7E-106Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313|EMBL:CDP07597.1}
TAIR10AT4G33280.11E-40AP2/B3-like transcriptional factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene48455024848239-
GWHAAZE00000004mRNA48455024848239-
GWHAAZE00000004exon48480574848239-
GWHAAZE00000004exon48466474847109-
GWHAAZE00000004exon48463674846545-
GWHAAZE00000004exon48455024845896-
GWHAAZE00000004five_prime_UTR48481744848239-
GWHAAZE00000004CDS48480574848173-
GWHAAZE00000004CDS48466474847109-
GWHAAZE00000004CDS48463674846545-
GWHAAZE00000004CDS48455704845896-
GWHAAZE00000004three_prime_UTR48455024845569-
Transcript Sequence

Network for GWHGAAZE014044

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0220GO:0005887 integral component of plasma membrane GOslim:cellular_component
Transcription factor B3 family Transcription factor B3


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02362.22B3321141.70E-16
PF02362.22B32393235.60E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyB3

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.930
SRR3591706second leaf2.146
SRR3591707mature leaf3.600
SRR3591708Shoot apex6.654
SRR3591709Stem5.228
SRR3591710White floral bud6.401
SRR3591711White flower5.447
SRR3591712Green floral bud4.275
SRR3591713Yellow flower2.420
SRP173429 SRR8316895Juvenile bud stage 7.342
SRR8316896Juvenile bud stage 9.059
SRR8316897Juvenile bud stage 4.748
SRR8316894Third green stage 3.292
SRR8316900Third green stage 11.684
SRR8316901Third green stage 9.328
SRR8316898Complete white stage 4.155
SRR8316899Complete white stage 12.946
SRR8316903Complete white stage 4.952
SRR8316902Silver flowering stage2.189
SRR8316904Silver flowering stage4.310
SRR8316905Silver flowering stage2.419
SRR8316906Gold flowering stage 6.004
SRR8316907Gold flowering stage 5.703
SRR8316908Gold flowering stage 7.016
SRP132670SRR6706286Control5.718
SRR6706287Light intensity 50%6.644
SRR6706288Light intensity 20%7.018
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.175
CNS0095593Slightly white alabastrum(diploid) 28.094
CNS0095594Slightly white alabastrum(diploid) 310.087
CNS0095595Whole white alabastrum(diploid) 28.290
CNS0095596Whole white alabastrum(diploid) 37.662
CNS0095597Whole white alabastrum(diploid) 48.695
CNS0095598Silvery flower (diploied) 19.778
CNS0095599Silvery flower (diploied) 27.552
CNS0095600Silvery flower (diploied) 38.209
CNS0095601Golden flower (diploid) 110.199
CNS0095602Golden flower (diploid) 29.111
CNS0095603Golden flower (diploid) 37.770
CNS0095604Slightly white alabastrum(tetraploid) 110.816
CNS0095605Slightly white alabastrum(tetraploid) 29.622
CNS0095606Slightly white alabastrum(tetraploid) 314.845
CNS0095607Whole white alabastrum(tetraploid) 19.511
CNS0095608Whole white alabastrum(tetraploid) 26.804
CNS0095609Whole white alabastrum(tetraploid) 312.694
CNS0095610Silvery flower (diploied) 18.819
CNS0095611Silvery flower (diploied) 211.383
CNS0095612Silvery flower (diploied) 36.639
CNS0095613Golden flower (tetraploid) 14.455
CNS0095614Golden flower (tetraploid) 27.497
CNS0095615Golden flower (tetraploid) 35.270
CRA001975CRR073297Stem 17.036
CRR073298Stem 26.159
CRR073299Stem 35.134
CRR073300Leaf 15.614
CRR073301Leaf 25.776
CRR073302Leaf 34.077
CRR073303Juvenile bud 15.328
CRR073304Juvenile bud 22.990
CRR073305Juvenile bud 35.505
CRR073306Third green 10.577
CRR073307Third green 21.400
CRR073308Third green 31.071
CRR073309Second white 10.475
CRR073310Second white 20.696
CRR073311Second white 31.100
CRR073312Silver flowering 10.796
CRR073313Silver flowering 20.851
CRR073314Silver flowering 30.083
CRR073315Gold flowering 11.587
CRR073316Gold flowering 22.857
CRR073317Gold flowering 33.219
CRR073318Tawny withering 14.365
CRR073319Tawny withering 24.077
CRR073320Tawny withering 34.161