Gene detail

Detail information of GWHGAAZE014147

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01232.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9C6B2\|NRAM2_ARATH	0	Metal transporter Nramp2
trEMBL	tr\|A0A068TYY2\|A0A068TYY2_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01232.1}
TAIR10	AT1G47240.1	5E-172	NRAMP metal ion transporter 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	6725382	6728528	+
GWHAAZE00000004	mRNA	6725382	6728528	+
GWHAAZE00000004	exon	6725382	6725561	+
GWHAAZE00000004	exon	6725690	6725910	+
GWHAAZE00000004	exon	6726628	6726764	+
GWHAAZE00000004	exon	6727001	6727626	+
GWHAAZE00000004	exon	6728316	6728528	+
GWHAAZE00000004	CDS	6725382	6725561	+
GWHAAZE00000004	CDS	6725690	6725910	+
GWHAAZE00000004	CDS	6726628	6726764	+
GWHAAZE00000004	CDS	6727001	6727626	+
GWHAAZE00000004	CDS	6728316	6728528	+

Transcript Sequence
>GWHTAAZE014161 ATGAGTGATCGTCCACCGGATTCTGATCCACACACCAAAGAACACCACCGCCTCTTATCCGACGACGACCAAGATGAAGACATCTTCCAATCCCAGGTGCCCTCGATATCGAATCCAGCAATGCCGTTGATCTGGTCCCACCGTTCTCATGGAAGAAGCTATGGAGATTTACAGGGCCAGGTAATGTCGGCGAGGATAGGGGTGGCGACGGGGCGGCATTTGGCTGAGATATGTAGGGAGGCGTATCCGTATTGGGCGACGCTGTTGTTGTGGTTCATGGCTGAAGTTGCCTTGATCGGGGCTGATATTCAGGAGGTTATTGGTAGTGCTATTGCTATCAACATTCTTAGCAATGGGGTTATCCCTCTTTGGGCTGGCGTTCTAATTACTGCTTCTGATTGTTTCATCTTCTTATTTCTTGAGAACTACGGAGTAAGGAAACTGGAAGCTGTTTTTGCTGTCCTTATTACAACTATGTCCGCGTCGTTTGCTTGGATGTTCATTGACACAAAACCTAGTAGGAAGGAACTTCTAATAGGTCTTTTGGTTCCAAGACTTAGCTCAAAAACAGTTCAGCAGGCTGTTGGAGTTGTTGGTTGTGTCATAACACCTCACAACGTATTTTTGTATTCCGCCTTGGTACAATCAAGGAAGATTGACCCCACAAAGAAAGGCCGGGTCCAAGAGGCTCTCAATTACTACATGATTGAGTCCACAATCGCTGTTTTTGTCACCTTCACAATCAATTTGTTTGTTACGGCTGTATTTGCCAAGGGATTTTATGGTACCAAAGAAGGCAAAAGTATTGGGCTAGTAAATGCAGGGCATTATCTTCAAGAGCGGTACAGGGGTGGGGTTTTCCCAATTCTTTACATATGGGGCATTGGATTATTGGCAGCTGGGCAGAGTAGTACCTTAACGGGTACATATGCTGGACAGTTTATAATGGGAGGTTTTCTCGATCTACGTTTGAAGAAATGGCTGAGGTCATTGATTACACGAAGTTGTGCAATTGTGCCAACTATAATCGTAGCTATTGTTTTTAACAGATCGGAAGATTCACTGGATGTGTTGAATGAATGGCTTAATGTGCTTCAGGGTATGCAGATTCCTTTTGCACTTATTCCACTTCTTACATTGTCGTCCAATGAGCAGCTCATGGGTAGGGTCGTGTGGACTGTCACCGCCATGGTAACTGTGATCAATGGGTTTGTTTTGCTGGAATTTTTCATGTCCGAAGTAAATGGAATGCTGCTTGGTTTTGTTGTCAGCATAGGGGCCTTAGCGTATGTGGGACTTATTTTGTATCTTATTTCACATGGCGGTGCTCTTCCTTCTGCCCCGTTCTCAAAGGTCACAACTGAGAGAGCCAGCTGA

Network for GWHGAAZE014147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01566.19	Nramp	60	391	1.20E-104

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21398	SLC11A2, DMT1, NRAMP2	Lysosome	map04142
		Ferroptosis	map04216
		Mineral absorption	map04978

Gene Ontology

GO term	Ontology	Name
GO:0030001	biological_process	metal ion transport
GO:0016020	cellular_component	membrane
GO:0046873	molecular_function	metal ion transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.591
	SRR3591706	second leaf	1.402
	SRR3591707	mature leaf	0.167
	SRR3591708	Shoot apex	1.923
	SRR3591709	Stem	1.428
	SRR3591710	White floral bud	1.538
	SRR3591711	White flower	0.256
	SRR3591712	Green floral bud	12.019
	SRR3591713	Yellow flower	0.023
SRP173429	SRR8316895	Juvenile bud stage	1.271
	SRR8316896	Juvenile bud stage	5.389
	SRR8316897	Juvenile bud stage	2.597
	SRR8316894	Third green stage	1.971
	SRR8316900	Third green stage	10.205
	SRR8316901	Third green stage	10.082
	SRR8316898	Complete white stage	0.094
	SRR8316899	Complete white stage	1.032
	SRR8316903	Complete white stage	0.134
	SRR8316902	Silver flowering stage	0.053
	SRR8316904	Silver flowering stage	0.050
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.002
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.073
SRP132670	SRR6706286	Control	4.229
	SRR6706287	Light intensity 50%	4.734
	SRR6706288	Light intensity 20%	4.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.696
	CNS0095593	Slightly white alabastrum(diploid) 2	4.729
	CNS0095594	Slightly white alabastrum(diploid) 3	5.303
	CNS0095595	Whole white alabastrum(diploid) 2	10.953
	CNS0095596	Whole white alabastrum(diploid) 3	15.571
	CNS0095597	Whole white alabastrum(diploid) 4	11.996
	CNS0095598	Silvery flower (diploied) 1	0.143
	CNS0095599	Silvery flower (diploied) 2	1.109
	CNS0095600	Silvery flower (diploied) 3	0.228
	CNS0095601	Golden flower (diploid) 1	0.371
	CNS0095602	Golden flower (diploid) 2	0.310
	CNS0095603	Golden flower (diploid) 3	0.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.851
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.461
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.442
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.222
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.340
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.342
	CNS0095610	Silvery flower (diploied) 1	0.000
	CNS0095611	Silvery flower (diploied) 2	0.173
	CNS0095612	Silvery flower (diploied) 3	0.554
	CNS0095613	Golden flower (tetraploid) 1	0.208
	CNS0095614	Golden flower (tetraploid) 2	0.232
	CNS0095615	Golden flower (tetraploid) 3	0.174
CRA001975	CRR073297	Stem 1	1.837
	CRR073298	Stem 2	1.541
	CRR073299	Stem 3	1.114
	CRR073300	Leaf 1	5.508
	CRR073301	Leaf 2	3.892
	CRR073302	Leaf 3	2.633
	CRR073303	Juvenile bud 1	5.825
	CRR073304	Juvenile bud 2	6.192
	CRR073305	Juvenile bud 3	0.812
	CRR073306	Third green 1	0.470
	CRR073307	Third green 2	1.553
	CRR073308	Third green 3	0.946
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.154
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.693
	CRR073313	Silver flowering 2	0.842
	CRR073314	Silver flowering 3	0.037
	CRR073315	Gold flowering 1	0.841
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.173
	CRR073318	Tawny withering 1	1.455
	CRR073319	Tawny withering 2	1.617
	CRR073320	Tawny withering 3	1.996