Gene detail

Detail information of GWHGAAZE014181

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006347865.1	PREDICTED: calcium-transporting ATPase 3, endoplasmic reticulum-type-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|P54209\|ATC1_DUNBI	Cation-transporting ATPase CA1
trEMBL	tr\|S8E1S2\|S8E1S2_9LAMI	Uncharacterized protein {ECO:0000313\|EMBL:EPS69623.1} (Fragment)
TAIR10	AT1G10130.1	endoplasmic reticulum-type calcium-transporting ATPase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	7291744	7322585	+
GWHAAZE00000004	mRNA	7291744	7322585	+
GWHAAZE00000004	exon	7291744	7292017	+
GWHAAZE00000004	exon	7292426	7292476	+
GWHAAZE00000004	exon	7292640	7292673	+
GWHAAZE00000004	exon	7294883	7295019	+
GWHAAZE00000004	exon	7297061	7297135	+
GWHAAZE00000004	exon	7299186	7299255	+
GWHAAZE00000004	exon	7299684	7299743	+
GWHAAZE00000004	exon	7299857	7299937	+
GWHAAZE00000004	exon	7301142	7301227	+
GWHAAZE00000004	exon	7301504	7301605	+
GWHAAZE00000004	exon	7301695	7301748	+
GWHAAZE00000004	exon	7302197	7302298	+
GWHAAZE00000004	exon	7302769	7302846	+
GWHAAZE00000004	exon	7303015	7303073	+
GWHAAZE00000004	exon	7307037	7307181	+
GWHAAZE00000004	exon	7307316	7307423	+
GWHAAZE00000004	exon	7307979	7308131	+
GWHAAZE00000004	exon	7308270	7308374	+
GWHAAZE00000004	exon	7308948	7309140	+
GWHAAZE00000004	exon	7309754	7309979	+
GWHAAZE00000004	exon	7310559	7310670	+
GWHAAZE00000004	exon	7311468	7311566	+
GWHAAZE00000004	exon	7311666	7311808	+
GWHAAZE00000004	exon	7312264	7312321	+
GWHAAZE00000004	exon	7317308	7317400	+
GWHAAZE00000004	exon	7318589	7318639	+
GWHAAZE00000004	exon	7318792	7318923	+
GWHAAZE00000004	exon	7319494	7319595	+
GWHAAZE00000004	exon	7320575	7320629	+
GWHAAZE00000004	exon	7321634	7321719	+
GWHAAZE00000004	exon	7321943	7322091	+
GWHAAZE00000004	exon	7322227	7322332	+
GWHAAZE00000004	exon	7322478	7322585	+
GWHAAZE00000004	five_prime_UTR	7291744	7291984	+
GWHAAZE00000004	CDS	7291985	7292017	+
GWHAAZE00000004	CDS	7292426	7292476	+
GWHAAZE00000004	CDS	7292640	7292673	+
GWHAAZE00000004	CDS	7294883	7295019	+
GWHAAZE00000004	CDS	7297061	7297135	+
GWHAAZE00000004	CDS	7299186	7299255	+
GWHAAZE00000004	CDS	7299684	7299743	+
GWHAAZE00000004	CDS	7299857	7299937	+
GWHAAZE00000004	CDS	7301142	7301227	+
GWHAAZE00000004	CDS	7301504	7301605	+
GWHAAZE00000004	CDS	7301695	7301748	+
GWHAAZE00000004	CDS	7302197	7302298	+
GWHAAZE00000004	CDS	7302769	7302846	+
GWHAAZE00000004	CDS	7303015	7303073	+
GWHAAZE00000004	CDS	7307037	7307181	+
GWHAAZE00000004	CDS	7307316	7307423	+
GWHAAZE00000004	CDS	7307979	7308131	+
GWHAAZE00000004	CDS	7308270	7308374	+
GWHAAZE00000004	CDS	7308948	7309140	+
GWHAAZE00000004	CDS	7309754	7309979	+
GWHAAZE00000004	CDS	7310559	7310670	+
GWHAAZE00000004	CDS	7311468	7311566	+
GWHAAZE00000004	CDS	7311666	7311808	+
GWHAAZE00000004	CDS	7312264	7312321	+
GWHAAZE00000004	CDS	7317308	7317400	+
GWHAAZE00000004	CDS	7318589	7318639	+
GWHAAZE00000004	CDS	7318792	7318923	+
GWHAAZE00000004	CDS	7319494	7319595	+
GWHAAZE00000004	CDS	7320575	7320629	+
GWHAAZE00000004	CDS	7321634	7321719	+
GWHAAZE00000004	CDS	7321943	7322091	+
GWHAAZE00000004	CDS	7322227	7322332	+
GWHAAZE00000004	CDS	7322478	7322585	+

Transcript Sequence
>GWHTAAZE014195 GCGCGGTCAACCCCCACCCTACCCCCACGTTATACATCAACCCTTGCACCACTAAACCCACCGGGGCGCTGCTTGATCGTAACGCCTGTGTCTTTCCAGAACAAAATATCAATGGCACTTTCAATTTAGATCTCCATAAAATTCGTCGATCCCAAAAAATAAATAAATTACACATCAGTCCCCGCGTTCAACCGGATCACTCTTCGTCATCACTGCCCTCGGAACTGAACTCGATTCTTCAATGGAGGACGCGTTTGCTCGATCTGCTTCAGAGGTTCTGGAATTCTTTGGCGTGGATCCTGCAAAAGGCCTTTCGGATTTCCAGGTTGCTGAACATTCTAGAATTTATGGCAGAAACGGCACTCCCTTTTGGAAATTGGTATTGAAGCAATTTGACGATTTACTGGTGAAGATATTGATTGCAGCTGCTATTGTCTCTTTCCTTTTGGCCTTGGTTGATGGAGAGACAGGCCTTACAGCATTCTTAGAGCCTTCTGTTATCCTCATGATATTGGCAGCAAATGCAGCAGTTGGAGTAATCACAGAAACAAATGCTGAAAAGGCTCTAGAGGAGCTACGTGCCTATCAAGCAGATGTTGCGACTGTCCTACGAAATGGTAATGCAAACATTCAAGTATACGGTTGCTTCTCAATATTACCAGCATCAGATCTTGTCCCTGGAGATATTGTAGAAGTTAGTGTGGGGTGCCAAATTCCAGCAGATATGAGAATGATTGAGATGCTAAGTGATCATTTACGTGTTGATCAAGCAATTCTTACAGGTGAGAGCTGTTCTGTGGAAAAGGAGCTTGATTCCACGTTAGCAACCAACGCAGTGTACCAAGATAAGACGAGCATCCTCTTCTCTGGAACAGTAGTGGTTGCAGGAAGGGCAAGAGCCGTTGTTGTTGGAGTTGGATCTAACACCGCAATGGGCAGCATACGTGATTCCATGTTGAGAACAGAAGACGAGGTGACACCATTGAAAAGAAAACTGGATGAATTTGGTACTTTTTTGGCCAAGGTTATTGCAGGTATTTGCGTATTGGTATGGATTGTAAATATTGGTCACTTCCGAGATCCTGCCCATGGAGGCTTCTTGCGAGGTGCAATTCATTACTTTAAGCATGTCATGCCATGGTTTATGATACTTCCATTTGATTATGGTGAGGTAGTCCTTTGGGTCCCTTGCTCATGGGAAGAAATTGCAGTTGCTCTAGCGGTTGCAGCAATTCCCGAAGGGCTTCCTGCTGTTGTTACCACGTGCTTGGCTCTTGGAACAAAAAGAATGGCTCGGCTGAATGCTATTGTGAGATCTCTGCCGTCTGTGGAAACATTGGGCTGTACAACAGTAATATGCAGTGATAAAACTGGTACTCTGACTACCAATATGATGTCTGTTTCAAAGTTATGCGTGCTTCATTCTGTGAGCGATGCTCCTATGGCCGCTGAATACAGTGTCAGTGGGACTACATTTGCACCAGAAGGCTTTATCTTTGACAGCACAGGAGTGCAGCTCGAATTTCCAGCTCAATTCCCATGCCTTCTCCACACAGCGATGTGTTCAGCCCTTTGCAATGAGTCCGTTATACAATACAACCCAGACAAGAGGAACTATGAAAAGATTGGCGAGTCAACTGAAGTAGCTCTTCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTGATTCTATGCCCTCTGCTCTGAATCTGCTGAGCAAGCACGAACGAGCTTCTTACTGTAATCGTTATTGGGAGAACCAATTCAAAAAGCAAATCGATGAAGGCAGAGGTGGAACCAGTGGTGGAAGGAGTGGACTAGTAGAGGTGGTCCGATGGAGGAGCAATGAATCGGTGAAGGTGTGGAGGAGTGGACTAGTAGAGGTGGTCTGGTGGAGGAGGAGCAGTGAATCGGTGAAGCCCTGTGGAGGAGTGGACTGTGGAGCGCTGAATTGGTGGAGTGAAGATCATAGTTGGGAATCTAATGTCTTCCAGGTTTCTCTTTTGGAATTTTCTCGCGACCGCAAAATGATGAGTGTGCTTTGTAGCCGAAAGCAAATGGAGATTATGTTCTCCAAAGGTGCCCCTGAGAGTATTATTTCTAGATGCACAAATATTCTATGCAATGATGATGGTTCCACCGTTCCTTTAACTCCAAATATAAGAGATGTGTTGGAATCAAGATTCCGCAGTTTTGCAGGAAAAGAAACTTTAAGATGTCTAGCTTTAGCATTGAAAAGGATGCCCATGGGGCAACAGTCTCTTTCCTTTGATGATGAAAAAGACCTGACATTTATTGGGTTGGTTGGAATGCTAGATCCACCAAGAGAAGAAGTAAGAAATGCTATACTTTCATGCATGACTGCTGGCATACGTGTTATTGTTGTCACAGGGGATAGCAAGACCACTGCAGAATCACTGTGTCAAAAGATAGGTGCTTTTGGTATTCAAGATTTTGTGGGGCAGTCTTACACTGCCTCTGAGTTTGAGGAGCTTCCAGCATTGCAAAAGACAGTGGCGTTGCAACACATGACGCTCTTCACGAGGGTTGAACCCTCTCACAAAAGGATGCTGGTGGAAGCATTACAGCACCAAAATGAAGTGGTTGCAATGACTGGTGATGGTGTCAATGATGCACCTGCACTAAAGAAAGCAGATATCGGAATTGCCATGGGATCAGGAACAGCAGTTGCCAAGAGTGCTTCAGATATGGTTTTGGCTGATGACAATTTTGCTACTATTGTTGCGGCTGTTGCAGAGGGGAGAGCTATATACAATAACACAAAGCAGTTCATCAGATATATGATATCTTCTAACATTGGTGAAGTAGTTTGTATTTTTGTGGCAGCCGTACTTGGAATACCTGATACTCTAGTACCTGTCCAGCTGCTCTGGGTGAACTTGGTTACTGATGGATTGCCTGCCACTGCTATTGGTTTTAATAAGCAAGATTCAGATGTGATGAAGGCTAAACCCCGCAAGGTTAACGAAGCAGTTGTCACAGGCTGGCTGTTCTTTCGTTACTTAGTTATTGGAGCCTATGTTGGACTTGCCACCGTTGCGGGGTTCATATGGTGGTTTGTTTACTCTGATAGCGGGCCTAAGCTACCTTACACCGAATTGATGAATTTTGACAGTTGTCCAACTAGAGAAACTACCTATCCATGCAGTATATTTAATGACCGACACCCTTCAACCGTGTCAATGACAGTTCTTGTTGTTGTTGAGATGTTTAATGCATTGAACAACCTCAGTGAAAATCAGTCCCTTTGGGTCATCCCCCCCTGGAGTAATATGTGGCTTGTTGGTTCGATCATCATAACTATGCTCCTTCACATACTCATTTTGTATGTGCAACCATTATCTATTCTATTCTCTGTGACACCGTTAACTTGGGCTGATTGGACTGTTGTCTTGTATCTTTCATTTCCTGTAAGTATTTTGAATATTACAGTTGCCTGCAGATCTTCACCTCTTTGTTTCTGA

Network for GWHGAAZE014181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00690.27	Cation_ATPase_N	7	66	1.20E-12
PF00122.21	E1-E2_ATPase	116	352	5.90E-45
PF13246.7	Cation_ATPase	443	626	3.20E-16
PF00702.27	Hydrolase	684	806	4.40E-16
PF00689.22	Cation_ATPase_C	877	1068	2.10E-41

Protein Sequence

>GWHPAAZE014188
MEDAFARSASEVLEFFGVDPAKGLSDFQVAEHSRIYGRNGTPFWKLVLKQFDDLLVKILIAAAIVSFLLALVDGETGLTAFLEPSVILMILAANAAVGVITETNAEKALEELRAYQADVATVLRNGNANIQVYGCFSILPASDLVPGDIVEVSVGCQIPADMRMIEMLSDHLRVDQAILTGESCSVEKELDSTLATNAVYQDKTSILFSGTVVVAGRARAVVVGVGSNTAMGSIRDSMLRTEDEVTPLKRKLDEFGTFLAKVIAGICVLVWIVNIGHFRDPAHGGFLRGAIHYFKHVMPWFMILPFDYGEVVLWVPCSWEEIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKLCVLHSVSDAPMAAEYSVSGTTFAPEGFIFDSTGVQLEFPAQFPCLLHTAMCSALCNESVIQYNPDKRNYEKIGESTEVALRVFAEKVGLPGFDSMPSALNLLSKHERASYCNRYWENQFKKQIDEGRGGTSGGRSGLVEVVRWRSNESVKVWRSGLVEVVWWRRSSESVKPCGGVDCGALNWWSEDHSWESNVFQVSLLEFSRDRKMMSVLCSRKQMEIMFSKGAPESIISRCTNILCNDDGSTVPLTPNIRDVLESRFRSFAGKETLRCLALALKRMPMGQQSLSFDDEKDLTFIGLVGMLDPPREEVRNAILSCMTAGIRVIVVTGDSKTTAESLCQKIGAFGIQDFVGQSYTASEFEELPALQKTVALQHMTLFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFATIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLVPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFDSCPTRETTYPCSIFNDRHPSTVSMTVLVVVEMFNALNNLSENQSLWVIPPWSNMWLVGSIIITMLLHILILYVQPLSILFSVTPLTWADWTVVLYLSFPVSILNITVACRSSPLCF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05853	ATP2A	Calcium signaling pathway	map04020
		cAMP signaling pathway	map04024
		cGMP-PKG signaling pathway	map04022
		Thyroid hormone signaling pathway	map04919
		Cardiac muscle contraction	map04260
		Adrenergic signaling in cardiomyocytes	map04261
		Pancreatic secretion	map04972

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0000166	molecular_function	nucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.038
	SRR3591706	second leaf	13.994
	SRR3591707	mature leaf	13.834
	SRR3591708	Shoot apex	17.051
	SRR3591709	Stem	25.306
	SRR3591710	White floral bud	20.908
	SRR3591711	White flower	21.409
	SRR3591712	Green floral bud	20.638
	SRR3591713	Yellow flower	20.076
SRP173429	SRR8316895	Juvenile bud stage	11.383
	SRR8316896	Juvenile bud stage	16.892
	SRR8316897	Juvenile bud stage	8.693
	SRR8316894	Third green stage	6.300
	SRR8316900	Third green stage	15.186
	SRR8316901	Third green stage	15.026
	SRR8316898	Complete white stage	5.315
	SRR8316899	Complete white stage	16.682
	SRR8316903	Complete white stage	13.876
	SRR8316902	Silver flowering stage	6.790
	SRR8316904	Silver flowering stage	11.261
	SRR8316905	Silver flowering stage	5.320
	SRR8316906	Gold flowering stage	15.253
	SRR8316907	Gold flowering stage	14.090
	SRR8316908	Gold flowering stage	16.348
SRP132670	SRR6706286	Control	14.389
	SRR6706287	Light intensity 50%	15.518
	SRR6706288	Light intensity 20%	16.876
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.578
	CNS0095593	Slightly white alabastrum(diploid) 2	8.483
	CNS0095594	Slightly white alabastrum(diploid) 3	8.197
	CNS0095595	Whole white alabastrum(diploid) 2	9.121
	CNS0095596	Whole white alabastrum(diploid) 3	6.495
	CNS0095597	Whole white alabastrum(diploid) 4	6.848
	CNS0095598	Silvery flower (diploied) 1	12.573
	CNS0095599	Silvery flower (diploied) 2	10.750
	CNS0095600	Silvery flower (diploied) 3	19.207
	CNS0095601	Golden flower (diploid) 1	11.714
	CNS0095602	Golden flower (diploid) 2	17.566
	CNS0095603	Golden flower (diploid) 3	17.172
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.286
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.030
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.132
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.727
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.680
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.644
	CNS0095610	Silvery flower (diploied) 1	16.964
	CNS0095611	Silvery flower (diploied) 2	16.981
	CNS0095612	Silvery flower (diploied) 3	18.100
	CNS0095613	Golden flower (tetraploid) 1	8.711
	CNS0095614	Golden flower (tetraploid) 2	15.604
	CNS0095615	Golden flower (tetraploid) 3	12.660
CRA001975	CRR073297	Stem 1	18.720
	CRR073298	Stem 2	15.992
	CRR073299	Stem 3	9.358
	CRR073300	Leaf 1	19.117
	CRR073301	Leaf 2	17.963
	CRR073302	Leaf 3	10.518
	CRR073303	Juvenile bud 1	11.359
	CRR073304	Juvenile bud 2	8.838
	CRR073305	Juvenile bud 3	14.441
	CRR073306	Third green 1	5.218
	CRR073307	Third green 2	3.429
	CRR073308	Third green 3	4.689
	CRR073309	Second white 1	3.989
	CRR073310	Second white 2	5.176
	CRR073311	Second white 3	8.148
	CRR073312	Silver flowering 1	4.352
	CRR073313	Silver flowering 2	2.957
	CRR073314	Silver flowering 3	3.199
	CRR073315	Gold flowering 1	3.562
	CRR073316	Gold flowering 2	5.854
	CRR073317	Gold flowering 3	2.529
	CRR073318	Tawny withering 1	11.194
	CRR073319	Tawny withering 2	9.952
	CRR073320	Tawny withering 3	11.805