Gene detail

Detail information of GWHGAAZE014230

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	8341543	8348965	+
GWHAAZE00000004	mRNA	8341543	8348965	+
GWHAAZE00000004	exon	8341543	8341701	+
GWHAAZE00000004	exon	8342768	8342912	+
GWHAAZE00000004	exon	8343111	8343226	+
GWHAAZE00000004	exon	8343308	8343382	+
GWHAAZE00000004	exon	8343516	8343569	+
GWHAAZE00000004	exon	8343687	8343824	+
GWHAAZE00000004	exon	8344603	8344692	+
GWHAAZE00000004	exon	8345700	8345822	+
GWHAAZE00000004	exon	8347374	8347493	+
GWHAAZE00000004	exon	8347712	8347828	+
GWHAAZE00000004	exon	8348039	8348095	+
GWHAAZE00000004	exon	8348192	8348266	+
GWHAAZE00000004	exon	8348885	8348965	+
GWHAAZE00000004	CDS	8341543	8341701	+
GWHAAZE00000004	CDS	8342768	8342912	+
GWHAAZE00000004	CDS	8343111	8343226	+
GWHAAZE00000004	CDS	8343308	8343382	+
GWHAAZE00000004	CDS	8343516	8343569	+
GWHAAZE00000004	CDS	8343687	8343824	+
GWHAAZE00000004	CDS	8344603	8344692	+
GWHAAZE00000004	CDS	8345700	8345822	+
GWHAAZE00000004	CDS	8347374	8347493	+
GWHAAZE00000004	CDS	8347712	8347828	+
GWHAAZE00000004	CDS	8348039	8348095	+
GWHAAZE00000004	CDS	8348192	8348266	+
GWHAAZE00000004	CDS	8348885	8348965	+

Transcript Sequence
>GWHTAAZE014244 ATGGTGGTGAGGAAAGTAGGAAAGTATGAAGTTGGGAGGACGATCGGAGAAGGAACATTCGCCAAGGTTAAGTTCGCTCAGAACACTGAGACCGGTGAGAGTGTCGCTATGAAAGTCCTCGATCGCACCACTATCATCAAGCACAAGATGGTCGACCAGATTAAGAGGGAGATATCTATCATGAAGCTAGTTAGACATCCAAATGTTGTTCGTTTGCATGAGGCATGGGCTCAAAATCTTGAATATAAGCTTTATTTTGTTGGAATGTTCGCTTTTAAAAGCCTTTTCCATCTCCATGAGGCAGGTATGCAGGTTCATCATGGACGACTCAGTGAAGCTGAATCTCGGAGGTATTTCCAACAACTTATAGATGGTGTGGATTATTGCCACAGCAAGGGCGTTTACCATAGAGATTTAAAGCCTGAAAATCTTTTACTAGATTCCCAAGAAAATCTAAAAATATCAGATTTTGGGCTTAGCGCATTGCCTGGAGAAGGGATCAGCCTCCTACGGACGACCTGTGGTACCCCAAACTATGTTGCACCTGAGGTACTCAGTCACAAGGGTTATGACGGTGCTTTGGCAGATGTGTGGTCCTGTGGGGTCATTCTATATGTTCTAATTGCAGGATATCTCCCATTTGATGAAATGGATCTCACCACACTGTACAGTAAGGCATGGAATTGTATTGATAGAGCAGAATTTTCGTGCCCAACTTGGTTTCCAGTTGGAGCAAAATCTTTAATTCACCGAATTTTAGATCCAAATCCTGAAACTCGTATTCGGATTGAGGAGATCAGGAATGATGAGTGGTTCAAGAGGAGCTATGTTCCTGTCAGACTTCTTGAGTATGAAGATGTTAACCTGGATGATGTAAATGCCGTTTTTGATGATACTGAGGAAGAACGGTTTGAAGAACGATGCAGGGATGAGGATGCAGGTCCTCTGGTTCTTAATGCATTCGACCTAATTATTCTCTCTCAGGGTTTAAACCTTTCTGCAATGTTTGACCGTGGACAGGACTCAGTGAAGCATCAAACGCGTTTTGTTTCACAGAAACCAGCAAAGGTTGTTTTGTCGAGTATGGAAGTTGTTGCACAATCAATGGGTTTCAAGACACATATTCGTAATTTTAAGATGAGGGTGGAAGGCCTTTCAGCGAATAAGACTTCACATTTCTCTGTTATCTTGGAAATTTTTCAAGTTGCTCCCACCTTTATCATGGTTGACATTCAGAGAGCAGCTGGAGATGCTGCTGAATACCTGAAGGAGGTTGCGGAATCTGCACTTGCAGGTTCGGTTGAAGACTCCAAACGGGAAATTGGGAATTACTTACCCACTTCTGTATAA

Network for GWHGAAZE014230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0255	GO:0034477 U6 snRNA 3'-end processing GOslim:biological_process GO:0004518 nuclease activity GOslim:molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.010
	SRR3591706	second leaf	23.044
	SRR3591707	mature leaf	15.797
	SRR3591708	Shoot apex	20.144
	SRR3591709	Stem	49.519
	SRR3591710	White floral bud	22.219
	SRR3591711	White flower	24.681
	SRR3591712	Green floral bud	18.059
	SRR3591713	Yellow flower	17.318
SRP173429	SRR8316895	Juvenile bud stage	15.463
	SRR8316896	Juvenile bud stage	18.427
	SRR8316897	Juvenile bud stage	10.341
	SRR8316894	Third green stage	8.120
	SRR8316900	Third green stage	15.389
	SRR8316901	Third green stage	14.642
	SRR8316898	Complete white stage	4.503
	SRR8316899	Complete white stage	26.268
	SRR8316903	Complete white stage	8.531
	SRR8316902	Silver flowering stage	7.684
	SRR8316904	Silver flowering stage	9.795
	SRR8316905	Silver flowering stage	5.308
	SRR8316906	Gold flowering stage	16.375
	SRR8316907	Gold flowering stage	16.744
	SRR8316908	Gold flowering stage	15.848
SRP132670	SRR6706286	Control	10.440
	SRR6706287	Light intensity 50%	11.393
	SRR6706288	Light intensity 20%	12.527
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.275
	CNS0095593	Slightly white alabastrum(diploid) 2	14.434
	CNS0095594	Slightly white alabastrum(diploid) 3	13.942
	CNS0095595	Whole white alabastrum(diploid) 2	14.926
	CNS0095596	Whole white alabastrum(diploid) 3	9.587
	CNS0095597	Whole white alabastrum(diploid) 4	11.238
	CNS0095598	Silvery flower (diploied) 1	27.639
	CNS0095599	Silvery flower (diploied) 2	23.657
	CNS0095600	Silvery flower (diploied) 3	14.104
	CNS0095601	Golden flower (diploid) 1	26.125
	CNS0095602	Golden flower (diploid) 2	15.093
	CNS0095603	Golden flower (diploid) 3	15.067
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.267
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.238
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.118
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.755
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.322
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.565
	CNS0095610	Silvery flower (diploied) 1	14.535
	CNS0095611	Silvery flower (diploied) 2	15.523
	CNS0095612	Silvery flower (diploied) 3	10.597
	CNS0095613	Golden flower (tetraploid) 1	7.341
	CNS0095614	Golden flower (tetraploid) 2	10.221
	CNS0095615	Golden flower (tetraploid) 3	7.281
CRA001975	CRR073297	Stem 1	18.498
	CRR073298	Stem 2	18.832
	CRR073299	Stem 3	10.517
	CRR073300	Leaf 1	17.691
	CRR073301	Leaf 2	16.415
	CRR073302	Leaf 3	10.765
	CRR073303	Juvenile bud 1	10.947
	CRR073304	Juvenile bud 2	4.762
	CRR073305	Juvenile bud 3	10.384
	CRR073306	Third green 1	2.067
	CRR073307	Third green 2	2.863
	CRR073308	Third green 3	3.500
	CRR073309	Second white 1	1.983
	CRR073310	Second white 2	4.362
	CRR073311	Second white 3	3.194
	CRR073312	Silver flowering 1	2.603
	CRR073313	Silver flowering 2	1.644
	CRR073314	Silver flowering 3	2.229
	CRR073315	Gold flowering 1	6.203
	CRR073316	Gold flowering 2	10.179
	CRR073317	Gold flowering 3	5.406
	CRR073318	Tawny withering 1	21.086
	CRR073319	Tawny withering 2	15.552
	CRR073320	Tawny withering 3	22.511