Detail information of GWHGAAZE014256


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007018219.16.84452E-75K-box region and MADS-box transcription factor family protein [Theobroma cacao]
Swissprottr|Q9FUY6|JOIN_SOLLC4E-54MADS-box protein JOINTLESS
trEMBLtr|A0A061FLR3|A0A061FLR3_THECC3E-75K-box region and MADS-box transcription factor family protein {ECO:0000313|EMBL:EOY15444.1}
TAIR10AT2G22540.13E-35K-box region and MADS-box transcription factor family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene88760838882985-
GWHAAZE00000004mRNA88760838882985-
GWHAAZE00000004exon88828048882985-
GWHAAZE00000004exon88779718878070-
GWHAAZE00000004exon88778028877843-
GWHAAZE00000004exon88771668877207-
GWHAAZE00000004exon88768188877014-
GWHAAZE00000004exon88760838876107-
GWHAAZE00000004CDS88828048882985-
GWHAAZE00000004CDS88779718878070-
GWHAAZE00000004CDS88778028877843-
GWHAAZE00000004CDS88771668877207-
GWHAAZE00000004CDS88768188877014-
GWHAAZE00000004CDS88760838876107-
Transcript Sequence

Network for GWHGAAZE014256

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261Protein Kinases RLK-Pelle_CrRLK1L-1 family Protein Kinases RLK-Pelle_CrRLK1L-1
Protein Kinases RLK-Pelle_LRR-Xa family Protein Kinases RLK-Pelle_LRR-Xa
Protein Kinases RLK-Pelle_RLCK-IV family Protein Kinases RLK-Pelle_RLCK-IV
Transcription factor MADS-MIKC family Transcription factor MADS-MIKC
GO:0006783 heme biosynthetic process GOslim:biological_process
GO:0006468 protein phosphorylation GOslim:biological_process
GO:0005524 ATP binding GOslim:molecular_function
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity GOslim:molecular_function
GO:0004325 ferrochelatase activity GOslim:molecular_function
GO:0004672 protein kinase activity GOslim:molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding GOslim:molecular_function
GO:0045944 positive regulation of transcription by RNA polymerase II GOslim:biological_process
GO:0042254 ribosome biogenesis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00319.19SRF-TF10572.60E-24
PF01486.18K-box581233.00E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMADS-MIKC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0045944biological_processpositive regulation of transcription by RNA polymerase II
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0046983molecular_functionprotein dimerization activity
GO:0003700molecular_functionDNA-binding transcription factor activity
GO:0000977molecular_functionRNA polymerase II transcription regulatory region sequence-specific DNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf174.541
SRR3591706second leaf26.080
SRR3591707mature leaf26.871
SRR3591708Shoot apex89.553
SRR3591709Stem225.202
SRR3591710White floral bud8.329
SRR3591711White flower4.794
SRR3591712Green floral bud30.424
SRR3591713Yellow flower6.164
SRP173429 SRR8316895Juvenile bud stage 12.612
SRR8316896Juvenile bud stage 39.479
SRR8316897Juvenile bud stage 10.919
SRR8316894Third green stage 16.030
SRR8316900Third green stage 36.063
SRR8316901Third green stage 40.494
SRR8316898Complete white stage 5.631
SRR8316899Complete white stage 39.800
SRR8316903Complete white stage 7.406
SRR8316902Silver flowering stage3.438
SRR8316904Silver flowering stage4.476
SRR8316905Silver flowering stage1.438
SRR8316906Gold flowering stage 2.514
SRR8316907Gold flowering stage 4.732
SRR8316908Gold flowering stage 13.972
SRP132670SRR6706286Control15.562
SRR6706287Light intensity 50%13.537
SRR6706288Light intensity 20%13.195
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.524
CNS0095593Slightly white alabastrum(diploid) 238.239
CNS0095594Slightly white alabastrum(diploid) 345.471
CNS0095595Whole white alabastrum(diploid) 236.079
CNS0095596Whole white alabastrum(diploid) 349.409
CNS0095597Whole white alabastrum(diploid) 442.821
CNS0095598Silvery flower (diploied) 115.458
CNS0095599Silvery flower (diploied) 212.648
CNS0095600Silvery flower (diploied) 313.526
CNS0095601Golden flower (diploid) 18.137
CNS0095602Golden flower (diploid) 219.747
CNS0095603Golden flower (diploid) 319.126
CNS0095604Slightly white alabastrum(tetraploid) 119.845
CNS0095605Slightly white alabastrum(tetraploid) 226.288
CNS0095606Slightly white alabastrum(tetraploid) 38.658
CNS0095607Whole white alabastrum(tetraploid) 122.306
CNS0095608Whole white alabastrum(tetraploid) 219.576
CNS0095609Whole white alabastrum(tetraploid) 314.649
CNS0095610Silvery flower (diploied) 116.164
CNS0095611Silvery flower (diploied) 214.878
CNS0095612Silvery flower (diploied) 314.890
CNS0095613Golden flower (tetraploid) 115.228
CNS0095614Golden flower (tetraploid) 217.499
CNS0095615Golden flower (tetraploid) 32.251
CRA001975CRR073297Stem 134.546
CRR073298Stem 231.617
CRR073299Stem 332.452
CRR073300Leaf 122.791
CRR073301Leaf 225.366
CRR073302Leaf 329.676
CRR073303Juvenile bud 119.901
CRR073304Juvenile bud 213.150
CRR073305Juvenile bud 312.539
CRR073306Third green 13.823
CRR073307Third green 21.476
CRR073308Third green 32.890
CRR073309Second white 13.805
CRR073310Second white 22.152
CRR073311Second white 31.602
CRR073312Silver flowering 10.947
CRR073313Silver flowering 22.707
CRR073314Silver flowering 31.925
CRR073315Gold flowering 1158.477
CRR073316Gold flowering 2183.137
CRR073317Gold flowering 3123.211
CRR073318Tawny withering 1194.900
CRR073319Tawny withering 2161.093
CRR073320Tawny withering 3170.281