Gene detail

Detail information of GWHGAAZE014293

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008342522.1	PREDICTED: isoamylase 3, chloroplastic-like [Malus domestica]
Swissprot	tr\|Q9M0S5\|ISOA3_ARATH	Isoamylase 3, chloroplastic (Precursor)
trEMBL	tr\|A0A067LA91\|A0A067LA91_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP41425.1}
TAIR10	AT4G09020.1	isoamylase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9613514	9640870	-
GWHAAZE00000004	mRNA	9613514	9640870	-
GWHAAZE00000004	exon	9640764	9640870	-
GWHAAZE00000004	exon	9640361	9640451	-
GWHAAZE00000004	exon	9640194	9640268	-
GWHAAZE00000004	exon	9639143	9639300	-
GWHAAZE00000004	exon	9638692	9638875	-
GWHAAZE00000004	exon	9638118	9638354	-
GWHAAZE00000004	exon	9637658	9637762	-
GWHAAZE00000004	exon	9630634	9630738	-
GWHAAZE00000004	exon	9630108	9630242	-
GWHAAZE00000004	exon	9629622	9629708	-
GWHAAZE00000004	exon	9627024	9627081	-
GWHAAZE00000004	exon	9625447	9625510	-
GWHAAZE00000004	exon	9624687	9624786	-
GWHAAZE00000004	exon	9624172	9624272	-
GWHAAZE00000004	exon	9618142	9618193	-
GWHAAZE00000004	exon	9616929	9616991	-
GWHAAZE00000004	exon	9616468	9616557	-
GWHAAZE00000004	exon	9616290	9616362	-
GWHAAZE00000004	exon	9615959	9616038	-
GWHAAZE00000004	exon	9615641	9615777	-
GWHAAZE00000004	exon	9613920	9614028	-
GWHAAZE00000004	exon	9613514	9613627	-
GWHAAZE00000004	CDS	9640764	9640870	-
GWHAAZE00000004	CDS	9640361	9640451	-
GWHAAZE00000004	CDS	9640194	9640268	-
GWHAAZE00000004	CDS	9639143	9639300	-
GWHAAZE00000004	CDS	9638692	9638875	-
GWHAAZE00000004	CDS	9638118	9638354	-
GWHAAZE00000004	CDS	9637658	9637762	-
GWHAAZE00000004	CDS	9630634	9630738	-
GWHAAZE00000004	CDS	9630108	9630242	-
GWHAAZE00000004	CDS	9629622	9629708	-
GWHAAZE00000004	CDS	9627024	9627081	-
GWHAAZE00000004	CDS	9625447	9625510	-
GWHAAZE00000004	CDS	9624687	9624786	-
GWHAAZE00000004	CDS	9624172	9624272	-
GWHAAZE00000004	CDS	9618142	9618193	-
GWHAAZE00000004	CDS	9616929	9616991	-
GWHAAZE00000004	CDS	9616468	9616557	-
GWHAAZE00000004	CDS	9616290	9616362	-
GWHAAZE00000004	CDS	9615959	9616038	-
GWHAAZE00000004	CDS	9615641	9615777	-
GWHAAZE00000004	CDS	9613920	9614028	-
GWHAAZE00000004	CDS	9613514	9613627	-

Transcript Sequence
>GWHTAAZE014307 ATGCTCCACTCGCCTTTGTTCGATTCTTCTTCAAAAGCACAGCTTTCTCTTACTTCCATCAATGCCCATCGCTCCTTCCCTGCAGCACTTCAGCCTTCAGCCATGGGACCACGGAGGCAATTTATTGACCCTAAGTTGATTCTTAACAGGCTGAATTGGAGTAAGAAAGCGACTTCTGCGGACAAGAGTTTCACTAAGGTTAGACAACCGGAGCTTGGCAAGCGTAAGACTACTTGTGTGTACGGTCGGCGTGCAGAAGAAAGTGTGCTTCAGGAAGAATCTCCTGAGATGTTGGATACCATCCCATCCTTGAAAGTTTTCCCAGGACAGGCACATCCGCTAGGAGTATCAGAAGTTGAAAATGGAATCAATTTTGCTATATTTTCACAGCACGCGACTTCAGTAACACTTTGCTTATCACTTCCTGAGAGCAGCATTGTGTCAGCTACAATACAACTTATAGATGAACGAAGAGGACTTAAGAATTTTAATTTTCCAATCTATGGTGCTAGTTTTTCCAGGGGAAAGCATGAGAAACTTGATGTTGGAATGATAGAGCTACCTTTGGATCCTCATGTGAATAAAACTGGAGATATATGGCACATAAGTGTTGAGGATCTGCCTCGGAGCAAATTCCTCTATGGCTACCGCATAGACGGTCCTCGAGATTGGCAGCAAGGGCATCGGTTTGACAGAAGCATTGTTCTAATAGATCCTTATGCAAAACTTATTGAAGGTCGGCGAGTTTTTGGAGATGTCAGTGATAAGGCGTCTAATTTTCTTGGGACATATGATTTCAATACCTTGCCATTTGACTGGGGAAGCCATTACAAGCTTCCAAATATACCTGAGAAGGACCTTGTTATATATGAAATGAATGTTCGCGCTTTTACTGCTGATGAATCTAGTGGACTGCATAAAGACATACGTGGCAGCTATCTCGGTGTAATCGAGAAGATACCACACCTGTTAGAGCTTGGCATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGATGAGTTTGAGTTCCAGAGACGTCCAAATCCTAGAGATCACCTGATTAACACATGGGGTTATTCAACAATAAATTTCTTCGCTCCTATGAGTCGCTATGCAAGTGCTGGTGGAGGACCTGTTCATGCTTCTCAAGAGTTCAAAGAAATGGTAAAAGCTTTGCATCAGGTTGGAATAGAGGTCATTCTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCCATCCTTATACAACGTCTTTCCGTGGCATAGATAACAAGGTCTATTACATGGTGGATGTAAACAACAGTGGCGATTTGCTGAACTTCTCAGGCTGCGGGAATACATTAAATTGTAACCATCCTGTGGTCATGGAACTTATTCTTGACAGCTTAAGGCACTGGGTCAAAGAATATCACGTGGATGGGTTCCGCTTTGACCTTGCCAGTGTTCTCTGTCGAGGAACTGATGGTTCTCCTCTTTCTGCTCCGCCACTTATCAGGGCAATTGCTAAAGATGGCGTCCTATCAAGGTGTAAAATAATTGCAGAACCTTGGGATTGTGGAGGCCTCTATCTTGTCGGAAGATTTCCTAATTGGGACCGGTGGGCTGAGTGGAATGGGAAATATCGTGATGACATAAGAAGATTTATAAAGGGTGACACTGGTATGAAGGCAACTTTTGCAACTCGAGTTGCTGGTTCTGCTGACTTATACAAGGTTAATAAGCGCAAGCCATACCACAGTATCAATTTCATTACAGCACACGATGGGTTTACACTGTATGACGTCGTGTCATATAATTTTAAGCATAATGATGCTAATGGAGAAGGTGGCAATGATGGCTGCAATGACAATTTTAGCTGGAATTGCGGTTATGAAGGAGAAACTGCAGATACCAATATTACAGCCTTGCGCTCCCGGCAAATTAAGAACTTCCATTTGGCATTGATGGCATCACAGGGAACACCAATGATGCTGATGGGAGATGAATATGGACATACTCGTTACGGAAATAACAACAGTTATGGACATGATACTGGGCTTAACAATTTCCAATGGGAACAAGTATGTGCTACATTCCAGTTTTCTTTTGACAGGCTTCATGATGGCAATGGAGGAGACATCTACTTGGCTTTCAATGCACATGACTATTTTGTTAAAATCCCAATACCTTCACCACCGCAAAGAAGGCATTGGGTTCGAGTGGTAGACACCAATCTGGAGTCGCCTGAAGATTTCGTTCCTGAAGGTGTCCCAGGAATTGGAAACACGTACCGTGTTGCTCCATACTCATCCATTCTTCTTGAAGCAAAGCCATGA

Network for GWHGAAZE014293

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.19	CBM_48	186	241	5.90E-06
PF00128.25	Alpha-amylase	312	669	5.80E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01214	ISA, treX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.320
	SRR3591706	second leaf	44.322
	SRR3591707	mature leaf	50.864
	SRR3591708	Shoot apex	16.171
	SRR3591709	Stem	21.861
	SRR3591710	White floral bud	30.175
	SRR3591711	White flower	19.189
	SRR3591712	Green floral bud	58.806
	SRR3591713	Yellow flower	6.241
SRP173429	SRR8316895	Juvenile bud stage	37.111
	SRR8316896	Juvenile bud stage	43.206
	SRR8316897	Juvenile bud stage	32.580
	SRR8316894	Third green stage	26.508
	SRR8316900	Third green stage	93.251
	SRR8316901	Third green stage	72.630
	SRR8316898	Complete white stage	19.981
	SRR8316899	Complete white stage	89.519
	SRR8316903	Complete white stage	29.141
	SRR8316902	Silver flowering stage	9.585
	SRR8316904	Silver flowering stage	10.881
	SRR8316905	Silver flowering stage	3.543
	SRR8316906	Gold flowering stage	11.025
	SRR8316907	Gold flowering stage	12.439
	SRR8316908	Gold flowering stage	13.105
SRP132670	SRR6706286	Control	79.316
	SRR6706287	Light intensity 50%	95.514
	SRR6706288	Light intensity 20%	106.708
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.743
	CNS0095593	Slightly white alabastrum(diploid) 2	23.356
	CNS0095594	Slightly white alabastrum(diploid) 3	17.113
	CNS0095595	Whole white alabastrum(diploid) 2	22.484
	CNS0095596	Whole white alabastrum(diploid) 3	27.566
	CNS0095597	Whole white alabastrum(diploid) 4	19.533
	CNS0095598	Silvery flower (diploied) 1	10.814
	CNS0095599	Silvery flower (diploied) 2	14.477
	CNS0095600	Silvery flower (diploied) 3	13.654
	CNS0095601	Golden flower (diploid) 1	9.167
	CNS0095602	Golden flower (diploid) 2	9.997
	CNS0095603	Golden flower (diploid) 3	9.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.254
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.609
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.113
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.656
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.059
	CNS0095609	Whole white alabastrum(tetraploid) 3	78.579
	CNS0095610	Silvery flower (diploied) 1	12.858
	CNS0095611	Silvery flower (diploied) 2	16.400
	CNS0095612	Silvery flower (diploied) 3	15.848
	CNS0095613	Golden flower (tetraploid) 1	3.139
	CNS0095614	Golden flower (tetraploid) 2	6.204
	CNS0095615	Golden flower (tetraploid) 3	2.618
CRA001975	CRR073297	Stem 1	73.185
	CRR073298	Stem 2	65.613
	CRR073299	Stem 3	57.663
	CRR073300	Leaf 1	99.717
	CRR073301	Leaf 2	82.739
	CRR073302	Leaf 3	98.415
	CRR073303	Juvenile bud 1	97.790
	CRR073304	Juvenile bud 2	53.782
	CRR073305	Juvenile bud 3	95.134
	CRR073306	Third green 1	13.100
	CRR073307	Third green 2	4.845
	CRR073308	Third green 3	9.669
	CRR073309	Second white 1	3.902
	CRR073310	Second white 2	5.430
	CRR073311	Second white 3	3.695
	CRR073312	Silver flowering 1	1.320
	CRR073313	Silver flowering 2	1.460
	CRR073314	Silver flowering 3	1.433
	CRR073315	Gold flowering 1	22.247
	CRR073316	Gold flowering 2	43.941
	CRR073317	Gold flowering 3	26.682
	CRR073318	Tawny withering 1	10.276
	CRR073319	Tawny withering 2	11.495
	CRR073320	Tawny withering 3	14.386