Gene detail

Detail information of GWHGAAZE014300

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664347.1	5.8809E-144	PREDICTED: alcohol dehydrogenase-like 1 [Vitis vinifera]
Swissprot	tr\|Q9SK86\|ADHL1_ARATH	5E-123	Alcohol dehydrogenase-like 1
trEMBL	tr\|E0CRP3\|E0CRP3_VITVI	2E-144	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19197.3}
TAIR10	AT1G22430.2	2E-87	GroES-like zinc-binding dehydrogenase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	9732398	9740505	-
GWHAAZE00000004	mRNA	9732398	9740505	-
GWHAAZE00000004	exon	9740454	9740505	-
GWHAAZE00000004	exon	9740161	9740300	-
GWHAAZE00000004	exon	9740025	9740071	-
GWHAAZE00000004	exon	9738953	9739278	-
GWHAAZE00000004	exon	9737513	9737595	-
GWHAAZE00000004	exon	9735098	9735173	-
GWHAAZE00000004	exon	9734672	9734736	-
GWHAAZE00000004	exon	9732398	9732514	-
GWHAAZE00000004	CDS	9740454	9740505	-
GWHAAZE00000004	CDS	9740161	9740300	-
GWHAAZE00000004	CDS	9740025	9740071	-
GWHAAZE00000004	CDS	9738953	9739278	-
GWHAAZE00000004	CDS	9737513	9737595	-
GWHAAZE00000004	CDS	9735098	9735173	-
GWHAAZE00000004	CDS	9734672	9734736	-
GWHAAZE00000004	CDS	9732398	9732514	-

Transcript Sequence
>GWHTAAZE014314 ATGGAGAAGAATTGCTCATCAGAAGCTGCTGGAAAGCCCATAAGATGCAAAGCTGCCGTAGCTAGGATACCAGGGGAACCACTTCTTATAGAAGAGATTGAAGTAGCCCCTCCCAAAGCTTGGGAGGTTCGCATCAAAATACTCTGCACTTCCCTTTGCCACACTGATGTTACCTTCTGGAAATTGTCTGATGGACCGGCCTCAACTTTTCCAAGAATTTTTGGGCACGAAGCAGTTGGTGTAGTGGAGAGTGCAGGAAATCATGTGGAGGAAGTAAAAGGAGGAGATCTGGTATTGCCTCTGTTTCAGAGGAACTGCGAGGAATGCAGAGATTGCAAATCCAAAAAGAGCAATATTTGTACCATATTTCCAACAGAGACATACATTGGCATGCCAAGGGATGGGGGCAGCAGGTTTAAGGATATGAATGGAGAGGTTTTGCATCATTTTCTTTATGTTTCGAGCTTTGCGGAGTATACGGTGGTGGATGTCACGCATGTGGTGAAGATTAGCCATGAGATCCCCCTTGATAAAGCCTGTTTGCTCAGTTGCGGGGTCACCACCGGAATTGGTGCAGTATGGAAGGTTGCACAAGTGGAAGAGGGCTCTACTGTTGCCATATTTGGGCTTGGTGCCGTTGGACTTGCGGTTGCAGAGGGAGCAAGGCTTCATGGAGCATCAAAAATCATTGGAGTTGATTTGAATCCGCATAAAGTTGAAATTGGAAAGAAGTTTGGGGTGACTGATTTTATTAATCCTTCCAATTGCGTGGAAAAATCTGTGAGCCAGGAACTCAATTTGGATGAGTTCATTTCCCACGAAGTTGGTTTCCAGGACATTAACAAAGCTTTTGATCTACTCCTCCAAGGGAAGAGTCTTCGCTGCATCATATGGATGGATGCATAA

Network for GWHGAAZE014300

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08240.13	ADH_N	42	169	3.20E-24
PF00107.27	ADH_zinc_N	212	258	1.20E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00121	frmA, ADH5, adhC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Degradation of aromatic compounds	map01220
		Glycolysis / Gluconeogenesis	map00010
		Methane metabolism	map00680
		Fatty acid degradation	map00071
		Tyrosine metabolism	map00350
		Retinol metabolism	map00830
		Chloroalkane and chloroalkene degradation	map00625
		Naphthalene degradation	map00626
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008270	molecular_function	zinc ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.971
	SRR3591706	second leaf	3.704
	SRR3591707	mature leaf	0.730
	SRR3591708	Shoot apex	5.152
	SRR3591709	Stem	128.670
	SRR3591710	White floral bud	3.804
	SRR3591711	White flower	3.748
	SRR3591712	Green floral bud	1.618
	SRR3591713	Yellow flower	0.837
SRP173429	SRR8316895	Juvenile bud stage	8.387
	SRR8316896	Juvenile bud stage	3.939
	SRR8316897	Juvenile bud stage	3.655
	SRR8316894	Third green stage	1.020
	SRR8316900	Third green stage	0.613
	SRR8316901	Third green stage	0.589
	SRR8316898	Complete white stage	0.614
	SRR8316899	Complete white stage	4.934
	SRR8316903	Complete white stage	2.020
	SRR8316902	Silver flowering stage	0.970
	SRR8316904	Silver flowering stage	1.363
	SRR8316905	Silver flowering stage	0.998
	SRR8316906	Gold flowering stage	8.046
	SRR8316907	Gold flowering stage	6.658
	SRR8316908	Gold flowering stage	3.537
SRP132670	SRR6706286	Control	1.756
	SRR6706287	Light intensity 50%	1.566
	SRR6706288	Light intensity 20%	1.860
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.774
	CNS0095593	Slightly white alabastrum(diploid) 2	1.633
	CNS0095594	Slightly white alabastrum(diploid) 3	4.384
	CNS0095595	Whole white alabastrum(diploid) 2	1.611
	CNS0095596	Whole white alabastrum(diploid) 3	0.122
	CNS0095597	Whole white alabastrum(diploid) 4	1.150
	CNS0095598	Silvery flower (diploied) 1	6.614
	CNS0095599	Silvery flower (diploied) 2	10.089
	CNS0095600	Silvery flower (diploied) 3	2.323
	CNS0095601	Golden flower (diploid) 1	7.919
	CNS0095602	Golden flower (diploid) 2	1.852
	CNS0095603	Golden flower (diploid) 3	2.227
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.601
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.211
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.354
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.025
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.704
	CNS0095610	Silvery flower (diploied) 1	1.351
	CNS0095611	Silvery flower (diploied) 2	1.801
	CNS0095612	Silvery flower (diploied) 3	1.654
	CNS0095613	Golden flower (tetraploid) 1	0.393
	CNS0095614	Golden flower (tetraploid) 2	0.285
	CNS0095615	Golden flower (tetraploid) 3	0.347
CRA001975	CRR073297	Stem 1	12.475
	CRR073298	Stem 2	8.503
	CRR073299	Stem 3	10.795
	CRR073300	Leaf 1	0.222
	CRR073301	Leaf 2	0.404
	CRR073302	Leaf 3	0.650
	CRR073303	Juvenile bud 1	0.950
	CRR073304	Juvenile bud 2	0.687
	CRR073305	Juvenile bud 3	1.883
	CRR073306	Third green 1	0.576
	CRR073307	Third green 2	0.004
	CRR073308	Third green 3	1.639
	CRR073309	Second white 1	0.441
	CRR073310	Second white 2	0.474
	CRR073311	Second white 3	0.742
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.262
	CRR073316	Gold flowering 2	0.724
	CRR073317	Gold flowering 3	0.194
	CRR073318	Tawny withering 1	33.009
	CRR073319	Tawny withering 2	29.941
	CRR073320	Tawny withering 3	54.596