Gene detail

Detail information of GWHGAAZE014346

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN65841.1	0	hypothetical protein VITISV_009619 [Vitis vinifera]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	2E-70	Probable helicase MAGATAMA 3
trEMBL	tr\|A5BNC8\|A5BNC8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65841.1}
TAIR10	AT4G30100.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	10692810	10698788	+
GWHAAZE00000004	mRNA	10692810	10698788	+
GWHAAZE00000004	exon	10692810	10694121	+
GWHAAZE00000004	exon	10695084	10695347	+
GWHAAZE00000004	exon	10695809	10695904	+
GWHAAZE00000004	exon	10696001	10696163	+
GWHAAZE00000004	exon	10696273	10696405	+
GWHAAZE00000004	exon	10696505	10698271	+
GWHAAZE00000004	exon	10698363	10698788	+
GWHAAZE00000004	CDS	10692810	10694121	+
GWHAAZE00000004	CDS	10695084	10695347	+
GWHAAZE00000004	CDS	10695809	10695904	+
GWHAAZE00000004	CDS	10696001	10696163	+
GWHAAZE00000004	CDS	10696273	10696405	+
GWHAAZE00000004	CDS	10696505	10698271	+
GWHAAZE00000004	CDS	10698363	10698788	+

Transcript Sequence
>GWHTAAZE014360 ATGGGCTCTAAGGGAAGGCCAATATTTGATCTTAATGAACCTCCTGCGGAGGAGGATGAGGAGAATGATGGTTTCCTCTGCTCCCACAAACTTCAAAGGGCAGTTCCTTCCTCAAACACCCACACTTCCGACCTATTCGCAATATCCACGGGTCCCCTAGTAATAGTAAACAACCATGCTTTCTCACACGCCTCTTCCGTTTCTGGATTTCAGCCTTTTGTTCGACCAAAAGGTTCCGAAGGATCTGAATTTGGCGCTGAACAGAAGAGAGCGGGAGATATGAGCTTCAATTCTAATCCAGTTTTTAGTAATGGTGGGGATATAAATGCAGCACCACTGTTAGATTTGGCTTCTGCACATGCTAATGTCGACGATAAAGAAGAAGGGGAATGGTCTGATGCAGAAGGCTCTACTGATGCTTGCAAAAGCAGTAGCATGCCAGAACTAATTTCTGGTAACGAAAGGGATTCACGGGAGAAGGGAGTAGCTGAGACAATGGATCGCGGTGATGGTATTAAGGATGAAAATACTAATCATGCTTCTTTAGGATTGGGTCCTGATGCAAGTGATATGAAAAGCAATAGTAGCCGAAATTCTGAAGGCAGTTTCAAAGGTGATACTAATGTGGATGGTCGGGAAGATATTGGGTTGGCACAGAAACCAAGGGAAACTAAAGTAGCTGAAGCAAGTCATGTGATGAAGACCGCAAATAATCTAGGTAAGCGGCCTAAGCTTGACCTGCACAAGGAAGCAATGTTAGGAAAGAAGCGCAGTAGGCAGACCATGTTTCTTAATTTGGAAGATGTTAAGCAAGCTGGACCCATCAAAACTTCAACCCCTAGAAGGCCACCTGCTGCAACCCGTGCTAATGTGAGAGAGACAAATCCTATTTTTGCACCTGCTGAGCGCACTGGAGAAAAGCAGGTTCAACCAGCCAGCAAGGATGTGAAACAGGTTGATTTATCAATCAATGAAGGAAACAGTTATGTGGAATCTAATGATCCTAAATCTGAACATAATGGTGAAATGAATTCAGGACTTCTAGCTCGTCCTAGGAGGTTGAATAGTGCATCTGACCTTGCTGCCGAGGCTCAACCACCATCTGTTCCAAAACAGAGTTCCTGGAAGCAGCTCAATAATACGCAAGTCTCCAGTAGGAAGCCAGCTGTTGGTCAAAACTTCATGGACTCAAAAGTGGGACTCAAAAAAGTTCCTTCAAAGAAGCAAGCTGCTGTCAGCACCCAATATCAAGATACATCAGTGGAGCGCCTTCTGCGTGAGGTGACCAATGAAAATTTTTGGCATCATCCAGATTCCAAGTCCACAGAACATATTCAACCTATGGCCTCTGTTTACGTGAATAACAATGACTTTTTTTGCACCTCAGAGGAGGCGGAGCTTCAGTGTGTTCCTGGTAGCTTTGAATCTGTTGAAGAGTATGTCAGAGTATTTGAACCCTTGCTTTTTGAGGAGTGTAGGGCACAGCTTTACAGTACTTGGGAGGAATTAACTGAAACAGTTTCTAGAGATCTACATGTAATGGTCCGCGTTAAAAGCGTGGAAAGACGAGAAAGAGGTTGGTATGATGTTATAGTTATTCCCGCAAATGAGTGCAAATGGACATTCAAGGAAGGGGATGTTGCAATTCTTTCAACACCAAGGCCTGGATTAGTAAGATCAAAGAGGAGCAGTACTACTAACATTGAAGACGACGATGAGCCTGAGATTAGCGGACGAGTGGCTGGTACAGTTAGGCGACATATTCCTATTGATACTCGTGATCCTCCTGGGGCAATTCTTCATTTTTATGTCGGTGATTCCTATGATTCTAACAGCAAGGTTGATGATGATCATATTCTAAAGAAGCTACATCCAAAAGGCATATGGTTTCTAACCGCGCTTGGTTCTCTTGCGACCACCCAAAGGGAATACATTGCCCTGCATGCGTTTCGTCGGCTCAATTCACAGATGCAAACTGCAATACTTCAGCCTAGTCCAGAACAATTCCCGAAATACGAAGAACATCAGCCTGCAATGCCAGAGTGCTTCACACCAAGCTTTGTTGATTATCTACGTAGGACCTTCAATGGGCCCCAGCTAGCAGCAATTCAGTGGGCAGCTATGCATACAGCTGCTGGTACAACTAATGTGATGGCGAAGAGGCAAGATCCATGGCCTTTTACTCTAGTCCAAGGGCCTCCTGGGACAGGTAAAACACACACAGTCTGGGGAATGCTGAATGTCATCCACCTTGTTCAGTATCAGCACTACTATACTGCATTGCTTAAAAAGCTAGCACCCGAAAGCTATAAGCAAAATAGTGAGAGTAGCTTGGATAACGTTGCCACTGGTTCCATAGACGAAGTGCTCCAGAGCATGGATCAGAATCTCTTTCGGACACTTCCCAAACTTTGCCCTAAACCTAGAATGCTTGTTTGTGCTCCGTCAAATGCCGCAACCGACGAGCTGCTTTCGCGGGTTCTTGATCGTGGGTTCATTGATGGTGAGATGAAAGTTTATCGGCCTGATGTGGCTCGGGTTGGAGTTGATTCGCAAACACGAGCTGCCCAGGCAGTGTCTGTTGAGCGTAGAACTGAACAACTCCTAGTGAAGACCCGTGATGAGATCTATGGATGGATGCATCAGTTAAGAGGCCGGGAATCTCAGTTGTCTCAGCAGATTGCCTGCCTGCAAAGAGAACTTAACGTTGCTGCCGCAGCTGGTCGTGCCCAAGGCTCTGTAGGTGTAGATCCTGACATTCTTGTTGCTCGGGACCAGAACCGTGACACTTTGCTGCAAAACCTTGCAGCGGTGGTTGAGAATAGGGATAAAATTCTAGTGGAGATGTCTCGATTACTTATCTTGGAAGGCAAGTTTCGTGCCGGTGGCAACTTCAATTTGGAGGAAGCTCGGGCCAGTCTAGAGGCAAGTTTTGCGAACGAGGCTGAGGTCGTTTTTACAACGGTCTCAAGCAGCGGTCGCAAGTTGTTCTCACGTCTTACCCATGGTTTTGACATGGTTGTGATCGATGAAGCGGCCCAAGCCAGCGAAGTAGCAGTACTTCCTCCCCTTGCACTTGGTGCAGCTCGTTGTGTTCTAGTTGGGGACCCCCAGCAGCTTCCTGCCACAGTTATCAGCAAGGCTGCTGGGACCTTGCTATACAGTAGAAGCTTGTTTGAGAGATTTCAGCAAGCTGGCTGCCCTACAATGTTGTTGTCTGTTCAGTACAGGATGCACCCTCAGATAAGAGATTTTCCTTCTAGGTACTTCTACCAAGGACGCCTTACTGATAGTGAAAGTGTTACCAATAGGCCCGAGGAGATATATCATAAGGATCCTTTACTTAGACCTTACATCTTTTATGATATAACACACGGTAGGGAGTCCCATCGAGGTGGGTCCGTCTCTTATCAGAATATACATGAAGCACAGTTTTGTCTTCGTTTGTATGAGCATCTTCAGAAAACTTTGAAAACTTCAGGTTTGGGGAAAGTGTCTGTGGGCATAATCACTCCCTACAAGCTGCAGTTGAAGTGCCTTCAACGTGAGTTTGATGATGTTTTGAAATCAGAAGATGGGAAAGATGTTTATATCAATACCGTGGATGCTTTCCAAGGGCAAGAACGGGATGTCATTATAATGTCATGTGTCCGTGCATCAAATCATGGAGTGGGGTTCGTTGCAGATATCCGCAGAATGAATGTTGCTCTAACTCGTGCCAGAAGAGCTCTTTGGGTCATGGGGAATGCCAATGCTCTAATGAAATCTGAAGATTGGGCTGCATTGATTGCTGACGCCAAAGCAAGGAACTATTACATGGACATGGATACTCTCCCTAAAGATTTCCTTGTACCAAGGGGACCTGCTTATGCTCCTCCACCTGCCAAGGCCCCCATGAGGGGTCTAAGATCTGGTGGGCTAAGACATAATAGATCATATGATATGCGTGTCGAGTCTAGGTCAGGTACACCATCAGAAGAGGATGAGAAGCCTAAGTCGTCATTATTTTCTAGAAATGGGAACTACCGACCCTTTAAGCCGTCAATGGAGAACTCCTTGGATGATTTTGATCAGTCAGGCGATAAATCTCGAGATGCATGGCAATATGGTATTCAGAAGAAGCAAAGTTCCAATGGGGTTTTCGGGAAGAGAGACTTGTAA

Network for GWHGAAZE014346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13086.7	AAA_11	701	1047	4.10E-68
PF13087.7	AAA_12	1054	1250	6.20E-62

Protein Sequence

>GWHPAAZE014353
MGSKGRPIFDLNEPPAEEDEENDGFLCSHKLQRAVPSSNTHTSDLFAISTGPLVIVNNHAFSHASSVSGFQPFVRPKGSEGSEFGAEQKRAGDMSFNSNPVFSNGGDINAAPLLDLASAHANVDDKEEGEWSDAEGSTDACKSSSMPELISGNERDSREKGVAETMDRGDGIKDENTNHASLGLGPDASDMKSNSSRNSEGSFKGDTNVDGREDIGLAQKPRETKVAEASHVMKTANNLGKRPKLDLHKEAMLGKKRSRQTMFLNLEDVKQAGPIKTSTPRRPPAATRANVRETNPIFAPAERTGEKQVQPASKDVKQVDLSINEGNSYVESNDPKSEHNGEMNSGLLARPRRLNSASDLAAEAQPPSVPKQSSWKQLNNTQVSSRKPAVGQNFMDSKVGLKKVPSKKQAAVSTQYQDTSVERLLREVTNENFWHHPDSKSTEHIQPMASVYVNNNDFFCTSEEAELQCVPGSFESVEEYVRVFEPLLFEECRAQLYSTWEELTETVSRDLHVMVRVKSVERRERGWYDVIVIPANECKWTFKEGDVAILSTPRPGLVRSKRSSTTNIEDDDEPEISGRVAGTVRRHIPIDTRDPPGAILHFYVGDSYDSNSKVDDDHILKKLHPKGIWFLTALGSLATTQREYIALHAFRRLNSQMQTAILQPSPEQFPKYEEHQPAMPECFTPSFVDYLRRTFNGPQLAAIQWAAMHTAAGTTNVMAKRQDPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTALLKKLAPESYKQNSESSLDNVATGSIDEVLQSMDQNLFRTLPKLCPKPRMLVCAPSNAATDELLSRVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKTRDEIYGWMHQLRGRESQLSQQIACLQRELNVAAAAGRAQGSVGVDPDILVARDQNRDTLLQNLAAVVENRDKILVEMSRLLILEGKFRAGGNFNLEEARASLEASFANEAEVVFTTVSSSGRKLFSRLTHGFDMVVIDEAAQASEVAVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLTDSESVTNRPEEIYHKDPLLRPYIFYDITHGRESHRGGSVSYQNIHEAQFCLRLYEHLQKTLKTSGLGKVSVGIITPYKLQLKCLQREFDDVLKSEDGKDVYINTVDAFQGQERDVIIMSCVRASNHGVGFVADIRRMNVALTRARRALWVMGNANALMKSEDWAALIADAKARNYYMDMDTLPKDFLVPRGPAYAPPPAKAPMRGLRSGGLRHNRSYDMRVESRSGTPSEEDEKPKSSLFSRNGNYRPFKPSMENSLDDFDQSGDKSRDAWQYGIQKKQSSNGVFGKRDL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.632
	SRR3591706	second leaf	15.316
	SRR3591707	mature leaf	17.248
	SRR3591708	Shoot apex	15.188
	SRR3591709	Stem	23.866
	SRR3591710	White floral bud	34.094
	SRR3591711	White flower	37.443
	SRR3591712	Green floral bud	24.744
	SRR3591713	Yellow flower	27.705
SRP173429	SRR8316895	Juvenile bud stage	11.263
	SRR8316896	Juvenile bud stage	14.685
	SRR8316897	Juvenile bud stage	8.748
	SRR8316894	Third green stage	8.564
	SRR8316900	Third green stage	19.656
	SRR8316901	Third green stage	19.058
	SRR8316898	Complete white stage	9.380
	SRR8316899	Complete white stage	28.315
	SRR8316903	Complete white stage	22.060
	SRR8316902	Silver flowering stage	9.616
	SRR8316904	Silver flowering stage	17.398
	SRR8316905	Silver flowering stage	7.552
	SRR8316906	Gold flowering stage	23.852
	SRR8316907	Gold flowering stage	23.597
	SRR8316908	Gold flowering stage	23.571
SRP132670	SRR6706286	Control	18.467
	SRR6706287	Light intensity 50%	20.690
	SRR6706288	Light intensity 20%	21.373
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.166
	CNS0095593	Slightly white alabastrum(diploid) 2	6.402
	CNS0095594	Slightly white alabastrum(diploid) 3	5.893
	CNS0095595	Whole white alabastrum(diploid) 2	5.719
	CNS0095596	Whole white alabastrum(diploid) 3	4.367
	CNS0095597	Whole white alabastrum(diploid) 4	5.796
	CNS0095598	Silvery flower (diploied) 1	11.908
	CNS0095599	Silvery flower (diploied) 2	7.750
	CNS0095600	Silvery flower (diploied) 3	29.709
	CNS0095601	Golden flower (diploid) 1	7.812
	CNS0095602	Golden flower (diploid) 2	27.491
	CNS0095603	Golden flower (diploid) 3	27.132
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.818
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.944
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.138
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.432
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.000
	CNS0095610	Silvery flower (diploied) 1	25.839
	CNS0095611	Silvery flower (diploied) 2	22.518
	CNS0095612	Silvery flower (diploied) 3	26.949
	CNS0095613	Golden flower (tetraploid) 1	12.841
	CNS0095614	Golden flower (tetraploid) 2	20.978
	CNS0095615	Golden flower (tetraploid) 3	24.331
CRA001975	CRR073297	Stem 1	19.579
	CRR073298	Stem 2	18.065
	CRR073299	Stem 3	12.018
	CRR073300	Leaf 1	21.426
	CRR073301	Leaf 2	20.434
	CRR073302	Leaf 3	10.349
	CRR073303	Juvenile bud 1	9.345
	CRR073304	Juvenile bud 2	11.673
	CRR073305	Juvenile bud 3	21.394
	CRR073306	Third green 1	15.838
	CRR073307	Third green 2	8.887
	CRR073308	Third green 3	16.219
	CRR073309	Second white 1	8.879
	CRR073310	Second white 2	11.399
	CRR073311	Second white 3	15.208
	CRR073312	Silver flowering 1	16.357
	CRR073313	Silver flowering 2	17.577
	CRR073314	Silver flowering 3	15.256
	CRR073315	Gold flowering 1	4.280
	CRR073316	Gold flowering 2	10.353
	CRR073317	Gold flowering 3	6.106
	CRR073318	Tawny withering 1	9.692
	CRR073319	Tawny withering 2	7.526
	CRR073320	Tawny withering 3	9.027