Gene detail

Detail information of GWHGAAZE014446

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006373375.1	0	hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	3E-165	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|U5FP93\|U5FP93_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:ERP51172.1} (Fragment)
TAIR10	AT3G51550.1	3E-137	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	12148598	12151195	+
GWHAAZE00000004	mRNA	12148598	12151195	+
GWHAAZE00000004	exon	12148598	12150365	+
GWHAAZE00000004	exon	12150714	12151195	+
GWHAAZE00000004	CDS	12148598	12150365	+
GWHAAZE00000004	CDS	12150714	12151195	+

Transcript Sequence
>GWHTAAZE014460 ATGTTCACCTTCATTCTCTTCCTCTCCTCCTTCCTCTACCTCACGACCGCCGCATTATACACCCCTACAGATTATGTCCTCCTCAACTGCGGCAGTGACACCACCACCTCATCAATTGATGGCCGAAGCTGGGACGGTGACACCCGCTCCAAATTCTCTCCTCCCGATGCAGAATCCATTTCAACATCTTCCACGGCCTCGGGCCAAACCAACTCCATCACTCAAGTCCCCTACATGACTGCCCGCATAATTCAAAACTCTTCCTTCACCTACACCTTCCCTCTCTCCCCGGGCCCCAAATTCCTCCGCCTCTACTTCTACCCCGCCACCTATAACACCCTTGAAAAATCCACTTCCTTCTTCACCGTAACCGCCAACGACTACACTCTCCTCAAAAACTTTAGTGCTTTTCTCACCGTCACCCATTTAAAAAATCAAGACTCAATTATCAAAGAGTTCCTACTCCAAGTTACTGAACACAACTCACTCAACCTAACCTTTTCTCCCTCGCCCAACTCATATGCCTTCATTAATGGAATCGAAATCGTCTCCATTCCGGATAAGTACTATATCCACGGATTAGATAAAGGCATTACAAACGTAGGACAGATGACCCCTTATTATATTGATACCACCACTGCCCTCGAATCTCTGTACCGGTTCAACGTCGGCGGGAACGACATCCCGGGCACTAACGACACCGGAATGTTCCGTTCATGGGTAAAAGACGACGACTCTTTATTCGGCGGAAACTTAGGGTTTGCAGTTCACCTAGAAATTCCAATCACGTACACGTCTGCCACACCCAATTACAGTGCACCCAAGATGGTTTACACTACAGCCAGAACCATGAACAACAACAGTTTACGGTACAACATGACGTGGACATTCCCCGTTGATGCTGGTTTTTATTACCTGCTTCGACTCTACTTTTGTGAGTTTCAAAGGGAAATTACGGATGGCAATCAACGGGTGTTCACCATAGATATCAATAATCGGACGGCGGAGAAGGAAGCTGATGTCATCAAGTGGAGTAACGGCAACGGAATTCCTGTGTACAAAGACTACGTAGTGAGGGTCAACGATGACTCAAATAATGGCCGTGGTAGAGGAGATTTGTGGCTTTCTATGCACCCCAATATGAAGACCCTCTCTCAGTATGCCAATGCTATTTTAAACGGGTTGGAGATCTTCAAATTGAACCGATCCGACGGTAGCCTTGCCGGTCCCAATCCTGAATTAATCACCACTCCTACATCACCGTCAACGAACTTTCCAGCGACAAATAAACCGCAAAGCAAATCAACCATCTTCGCTGTCATCGGCGGTGTTCTCGGCGGCATCATCGTGGTCTCAATTCTAGGGTTTCTAATTTTCAGGCACCGGCGAACGGAGAAACACTACGTCAAGTCATCGATCGATCCAATTTCGTACACGTCAAAGTCCACGAAGAATAGTGCTTCATCGCTACCGTCGGGTTTATGCCGGCGATTTTCACTTGCAGAGATAAAATCGGCCACTGGAAACTTTGACGATAACTTTGTGATTGGTACAGGGGGATTTGGTAACGTGTATAAGGGGTACATAGACAATGGTGCCACTGCAGTTGCGATCAAGCGACTGAACGCCGCGTCAAATCAAGGGATCCGCGAATTCGAAACGGAAATCGAATTACTATCGCAGCTACGTCACCTCCATTTGGTATCTCTAATTGGTTACTGTGATGATAATGGAGAGATGGTATTGGTTTATGATTACATGGCAAATGTGTTGTGCGCTAGGCCTGCTATTATTCCCGGGTTGCCTAAGGAACAAGTAAACTTGGCTGAGTGGGCCCGATTGTCTTATCGAAAAGGGAAGCTTGAGAAGATTATTGATCCTCGTCTAAGGAGTGAGATTGCACCCGAGTGCTTAACCAAGTTCGGTGAGGTAGCTTATAGTTGCTTGAGAGATCAAGGGATCGAACGACCTGGAATGAATGATATAGTTTGGAACCTTGAATTTGTGTTACAACTTCAAGAGTCAGCAGATAAGATGGAACAAATTAAAGATGTAAGTGAAGCGAGCATCGGTTCCTATGCTCAAACTAGTTTGCACGGAACTGCACCCACAACCGATGATGACATGTTTTCTGAATCAACTGAAGGGATGTCCAAGTTTGAGAGTAATGACTCACTGTCAACTCCCAATCAATATGACTCCAAGTCTCAATCTGTTTTCTCGGAGATTATAAATCCAACAGGAAGATAA

Network for GWHGAAZE014446

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12819.8	Malectin_like	28	399	4.10E-43
PF07714.18	PK_Tyr_Ser-Thr	515	589	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004713	molecular_function	protein tyrosine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.770
	SRR3591706	second leaf	5.562
	SRR3591707	mature leaf	8.615
	SRR3591708	Shoot apex	3.385
	SRR3591709	Stem	15.703
	SRR3591710	White floral bud	2.468
	SRR3591711	White flower	3.591
	SRR3591712	Green floral bud	3.041
	SRR3591713	Yellow flower	1.465
SRP173429	SRR8316895	Juvenile bud stage	6.622
	SRR8316896	Juvenile bud stage	4.598
	SRR8316897	Juvenile bud stage	0.606
	SRR8316894	Third green stage	2.334
	SRR8316900	Third green stage	3.202
	SRR8316901	Third green stage	3.651
	SRR8316898	Complete white stage	0.689
	SRR8316899	Complete white stage	7.769
	SRR8316903	Complete white stage	2.007
	SRR8316902	Silver flowering stage	1.274
	SRR8316904	Silver flowering stage	2.262
	SRR8316905	Silver flowering stage	1.231
	SRR8316906	Gold flowering stage	5.227
	SRR8316907	Gold flowering stage	3.734
	SRR8316908	Gold flowering stage	1.942
SRP132670	SRR6706286	Control	9.097
	SRR6706287	Light intensity 50%	6.675
	SRR6706288	Light intensity 20%	5.743
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.663
	CNS0095593	Slightly white alabastrum(diploid) 2	4.292
	CNS0095594	Slightly white alabastrum(diploid) 3	5.011
	CNS0095595	Whole white alabastrum(diploid) 2	4.073
	CNS0095596	Whole white alabastrum(diploid) 3	1.274
	CNS0095597	Whole white alabastrum(diploid) 4	2.776
	CNS0095598	Silvery flower (diploied) 1	16.049
	CNS0095599	Silvery flower (diploied) 2	8.328
	CNS0095600	Silvery flower (diploied) 3	6.028
	CNS0095601	Golden flower (diploid) 1	10.224
	CNS0095602	Golden flower (diploid) 2	11.550
	CNS0095603	Golden flower (diploid) 3	10.950
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.355
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.994
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.560
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.149
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.024
	CNS0095610	Silvery flower (diploied) 1	0.509
	CNS0095611	Silvery flower (diploied) 2	0.612
	CNS0095612	Silvery flower (diploied) 3	0.396
	CNS0095613	Golden flower (tetraploid) 1	0.381
	CNS0095614	Golden flower (tetraploid) 2	0.531
	CNS0095615	Golden flower (tetraploid) 3	0.136
CRA001975	CRR073297	Stem 1	5.963
	CRR073298	Stem 2	5.397
	CRR073299	Stem 3	3.621
	CRR073300	Leaf 1	3.086
	CRR073301	Leaf 2	5.434
	CRR073302	Leaf 3	3.113
	CRR073303	Juvenile bud 1	2.943
	CRR073304	Juvenile bud 2	1.890
	CRR073305	Juvenile bud 3	5.563
	CRR073306	Third green 1	2.463
	CRR073307	Third green 2	2.431
	CRR073308	Third green 3	2.047
	CRR073309	Second white 1	2.856
	CRR073310	Second white 2	3.050
	CRR073311	Second white 3	3.391
	CRR073312	Silver flowering 1	2.287
	CRR073313	Silver flowering 2	1.187
	CRR073314	Silver flowering 3	1.363
	CRR073315	Gold flowering 1	23.502
	CRR073316	Gold flowering 2	43.025
	CRR073317	Gold flowering 3	34.741
	CRR073318	Tawny withering 1	16.419
	CRR073319	Tawny withering 2	11.626
	CRR073320	Tawny withering 3	13.204