Detail information of GWHGAAZE014612


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004288020.10PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase CLF-like [Fragaria vesca subsp. vesca]
Swissprottr|P93831|CLF_ARATH1E-141Histone-lysine N-methyltransferase CLF
trEMBLtr|M0ZXQ3|M0ZXQ3_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400010235}
TAIR10AT2G23380.17E-117SET domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1519190915208410-
GWHAAZE00000004mRNA1519190915208410-
GWHAAZE00000004exon1520834815208410-
GWHAAZE00000004exon1520512815205229-
GWHAAZE00000004exon1520471015205035-
GWHAAZE00000004exon1520434015204501-
GWHAAZE00000004exon1520328915203373-
GWHAAZE00000004exon1520268915202835-
GWHAAZE00000004exon1520253415202581-
GWHAAZE00000004exon1520237715202448-
GWHAAZE00000004exon1519601515196622-
GWHAAZE00000004exon1519550915195651-
GWHAAZE00000004exon1519515515195280-
GWHAAZE00000004exon1519482515194947-
GWHAAZE00000004exon1519410115194258-
GWHAAZE00000004exon1519359815193645-
GWHAAZE00000004exon1519301615193093-
GWHAAZE00000004exon1519190915192100-
GWHAAZE00000004CDS1520834815208410-
GWHAAZE00000004CDS1520512815205229-
GWHAAZE00000004CDS1520471015205035-
GWHAAZE00000004CDS1520434015204501-
GWHAAZE00000004CDS1520328915203373-
GWHAAZE00000004CDS1520268915202835-
GWHAAZE00000004CDS1520253415202581-
GWHAAZE00000004CDS1520237715202448-
GWHAAZE00000004CDS1519601515196622-
GWHAAZE00000004CDS1519550915195651-
GWHAAZE00000004CDS1519515515195280-
GWHAAZE00000004CDS1519482515194947-
GWHAAZE00000004CDS1519410115194258-
GWHAAZE00000004CDS1519359815193645-
GWHAAZE00000004CDS1519301615193093-
GWHAAZE00000004CDS1519190915192100-
Transcript Sequence

Network for GWHGAAZE014612

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00856.29SET7357918.30E-10
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.003
SRR3591706second leaf6.167
SRR3591707mature leaf3.966
SRR3591708Shoot apex15.907
SRR3591709Stem7.494
SRR3591710White floral bud6.803
SRR3591711White flower6.908
SRR3591712Green floral bud7.741
SRR3591713Yellow flower6.712
SRP173429 SRR8316895Juvenile bud stage 6.836
SRR8316896Juvenile bud stage 10.363
SRR8316897Juvenile bud stage 3.523
SRR8316894Third green stage 3.036
SRR8316900Third green stage 7.887
SRR8316901Third green stage 7.841
SRR8316898Complete white stage 2.137
SRR8316899Complete white stage 6.042
SRR8316903Complete white stage 4.545
SRR8316902Silver flowering stage1.593
SRR8316904Silver flowering stage2.615
SRR8316905Silver flowering stage1.184
SRR8316906Gold flowering stage 2.915
SRR8316907Gold flowering stage 3.388
SRR8316908Gold flowering stage 3.257
SRP132670SRR6706286Control2.771
SRR6706287Light intensity 50%3.509
SRR6706288Light intensity 20%3.748
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.112
CNS0095593Slightly white alabastrum(diploid) 26.270
CNS0095594Slightly white alabastrum(diploid) 38.343
CNS0095595Whole white alabastrum(diploid) 26.118
CNS0095596Whole white alabastrum(diploid) 35.899
CNS0095597Whole white alabastrum(diploid) 44.959
CNS0095598Silvery flower (diploied) 12.987
CNS0095599Silvery flower (diploied) 22.343
CNS0095600Silvery flower (diploied) 33.350
CNS0095601Golden flower (diploid) 12.475
CNS0095602Golden flower (diploid) 22.653
CNS0095603Golden flower (diploid) 31.794
CNS0095604Slightly white alabastrum(tetraploid) 18.547
CNS0095605Slightly white alabastrum(tetraploid) 28.240
CNS0095606Slightly white alabastrum(tetraploid) 37.927
CNS0095607Whole white alabastrum(tetraploid) 15.659
CNS0095608Whole white alabastrum(tetraploid) 25.095
CNS0095609Whole white alabastrum(tetraploid) 36.959
CNS0095610Silvery flower (diploied) 14.946
CNS0095611Silvery flower (diploied) 23.195
CNS0095612Silvery flower (diploied) 34.807
CNS0095613Golden flower (tetraploid) 12.189
CNS0095614Golden flower (tetraploid) 23.829
CNS0095615Golden flower (tetraploid) 32.321
CRA001975CRR073297Stem 16.952
CRR073298Stem 25.925
CRR073299Stem 34.321
CRR073300Leaf 15.082
CRR073301Leaf 25.257
CRR073302Leaf 32.848
CRR073303Juvenile bud 12.549
CRR073304Juvenile bud 21.773
CRR073305Juvenile bud 31.700
CRR073306Third green 11.243
CRR073307Third green 21.367
CRR073308Third green 31.257
CRR073309Second white 10.892
CRR073310Second white 22.191
CRR073311Second white 30.858
CRR073312Silver flowering 10.735
CRR073313Silver flowering 20.852
CRR073314Silver flowering 30.804
CRR073315Gold flowering 10.672
CRR073316Gold flowering 22.036
CRR073317Gold flowering 30.265
CRR073318Tawny withering 14.709
CRR073319Tawny withering 22.491
CRR073320Tawny withering 34.376