Detail information of GWHGAAZE014724


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006357754.10PREDICTED: uncharacterized protein LOC102587194 isoform X2 [Solanum tuberosum]
trEMBLtr|M1D0J2|M1D0J2_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400078676}
TAIR10AT5G49665.14E-136Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene1746091117463188-
GWHAAZE00000004mRNA1746091117463188-
GWHAAZE00000004exon1746091117462644-
GWHAAZE00000004exon1746282917463188-
GWHAAZE00000004CDS1746282917463188-
GWHAAZE00000004CDS1746091117462644-
Transcript Sequence

Network for GWHGAAZE014724

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17123.6zf-RING_111231526.40E-10
PF00092.29VWA3094492.40E-17
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.669
SRR3591706second leaf1.135
SRR3591707mature leaf3.496
SRR3591708Shoot apex2.164
SRR3591709Stem8.525
SRR3591710White floral bud8.889
SRR3591711White flower8.610
SRR3591712Green floral bud7.243
SRR3591713Yellow flower3.133
SRP173429 SRR8316895Juvenile bud stage 3.742
SRR8316896Juvenile bud stage 5.867
SRR8316897Juvenile bud stage 1.796
SRR8316894Third green stage 2.303
SRR8316900Third green stage 6.775
SRR8316901Third green stage 4.371
SRR8316898Complete white stage 12.660
SRR8316899Complete white stage 8.165
SRR8316903Complete white stage 14.634
SRR8316902Silver flowering stage6.069
SRR8316904Silver flowering stage7.436
SRR8316905Silver flowering stage5.590
SRR8316906Gold flowering stage 23.558
SRR8316907Gold flowering stage 20.118
SRR8316908Gold flowering stage 27.652
SRP132670SRR6706286Control8.420
SRR6706287Light intensity 50%7.663
SRR6706288Light intensity 20%6.989
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.809
CNS0095593Slightly white alabastrum(diploid) 23.669
CNS0095594Slightly white alabastrum(diploid) 37.811
CNS0095595Whole white alabastrum(diploid) 23.670
CNS0095596Whole white alabastrum(diploid) 32.966
CNS0095597Whole white alabastrum(diploid) 42.728
CNS0095598Silvery flower (diploied) 115.962
CNS0095599Silvery flower (diploied) 27.171
CNS0095600Silvery flower (diploied) 323.330
CNS0095601Golden flower (diploid) 110.841
CNS0095602Golden flower (diploid) 223.783
CNS0095603Golden flower (diploid) 322.249
CNS0095604Slightly white alabastrum(tetraploid) 14.642
CNS0095605Slightly white alabastrum(tetraploid) 24.886
CNS0095606Slightly white alabastrum(tetraploid) 35.125
CNS0095607Whole white alabastrum(tetraploid) 14.396
CNS0095608Whole white alabastrum(tetraploid) 23.370
CNS0095609Whole white alabastrum(tetraploid) 39.399
CNS0095610Silvery flower (diploied) 110.390
CNS0095611Silvery flower (diploied) 216.126
CNS0095612Silvery flower (diploied) 315.617
CNS0095613Golden flower (tetraploid) 110.511
CNS0095614Golden flower (tetraploid) 215.851
CNS0095615Golden flower (tetraploid) 335.715
CRA001975CRR073297Stem 118.298
CRR073298Stem 215.886
CRR073299Stem 331.987
CRR073300Leaf 113.528
CRR073301Leaf 214.796
CRR073302Leaf 316.929
CRR073303Juvenile bud 113.863
CRR073304Juvenile bud 29.823
CRR073305Juvenile bud 315.359
CRR073306Third green 120.475
CRR073307Third green 210.486
CRR073308Third green 311.450
CRR073309Second white 12.459
CRR073310Second white 21.218
CRR073311Second white 32.332
CRR073312Silver flowering 11.792
CRR073313Silver flowering 20.925
CRR073314Silver flowering 32.021
CRR073315Gold flowering 14.134
CRR073316Gold flowering 25.148
CRR073317Gold flowering 33.130
CRR073318Tawny withering 145.087
CRR073319Tawny withering 211.963
CRR073320Tawny withering 337.071