Gene detail

Detail information of GWHGAAZE014742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010660340.1	0	PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
Swissprot	tr\|Q8W1X2\|PDXK_ARATH	0	Pyridoxal kinase
trEMBL	tr\|A0A067LIQ9\|A0A067LIQ9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP44520.1}
TAIR10	AT5G37850.2	5E-146	pfkB-like carbohydrate kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	17862013	17873078	+
GWHAAZE00000004	mRNA	17862013	17873078	+
GWHAAZE00000004	exon	17862013	17862056	+
GWHAAZE00000004	exon	17862158	17862251	+
GWHAAZE00000004	exon	17863382	17863524	+
GWHAAZE00000004	exon	17863604	17863722	+
GWHAAZE00000004	exon	17865224	17865307	+
GWHAAZE00000004	exon	17866091	17866179	+
GWHAAZE00000004	exon	17867168	17867232	+
GWHAAZE00000004	exon	17869490	17869553	+
GWHAAZE00000004	exon	17869994	17870059	+
GWHAAZE00000004	exon	17870242	17870298	+
GWHAAZE00000004	exon	17870979	17871038	+
GWHAAZE00000004	exon	17871140	17871193	+
GWHAAZE00000004	exon	17872938	17873078	+
GWHAAZE00000004	CDS	17862013	17862056	+
GWHAAZE00000004	CDS	17862158	17862251	+
GWHAAZE00000004	CDS	17863382	17863524	+
GWHAAZE00000004	CDS	17863604	17863722	+
GWHAAZE00000004	CDS	17865224	17865307	+
GWHAAZE00000004	CDS	17866091	17866179	+
GWHAAZE00000004	CDS	17867168	17867232	+
GWHAAZE00000004	CDS	17869490	17869553	+
GWHAAZE00000004	CDS	17869994	17870059	+
GWHAAZE00000004	CDS	17870242	17870298	+
GWHAAZE00000004	CDS	17870979	17871038	+
GWHAAZE00000004	CDS	17871140	17871193	+
GWHAAZE00000004	CDS	17872938	17873078	+

Transcript Sequence
>GWHTAAZE014756 ACTGTTCCTGAATCGAGACCACTCGGAGGTTTTTCCTTTTTTAGGGTTAGAAGCTCGGTAATGGCGCCTCCTATTCTTTCCTTGGCTCTGCCATCAGGAACCGGTCGAGTTCTCAGTATTCAGTCTCACACTGTTCAGGGTTATGTGGGCAACAAATCAGCTGTCTTTCCTCTCCAGCTACTGGGTTATGACGTGGACCCAATAAATTCTGTGCAGTTCTCAAACCACACAGGCAAGCTGCTTAAATCACTTCATTCAAACAATCTGAGGCCTGAATTATGCTATGGTTATGCAGGATACCCAACTTTCAAGGGACAGGTTTTAAACGGAGAACAGCTAAGGGATTTGATTGAAGGCCTTGCAGCAAATGATTTGTTATACTATACCCATTTACTGACAGGATACATTGGCTCCGTTTCATTCTTGAACACTGTTTTAGAAGTCGTCAATAGGCTTCGTTCCATCAATCCTAAACTTATGTATGTGCTTTTCTCATCAGTCTGTGATCCAGTTATGGGCGACGAAGGAAAGCTCTATGTCCCTCCCGAACTAGTATCAGTATATCGTGAGAAGGTTGTCCCTGTTGCTTCAATGTTGACTCCTAATCAGTTCGAAGCAGAACAATTAACTGGGTCCAGGATTGTTTCTGAAGAAGATGGACGGGAGGCTTGTAGGATCCTTCATGCTGCTGGACCATCAAAGGTTGTGATAACAAGCATAAATATAGATGGCAATCTTCTCCTCATTGGCAGTCATCAGAAGGAAAAGGGTCAGACTCCTGCGCAATTCAAGATTATGATACGCAAAATTCCTGCATATTTTACGGGTATTCGCCTGCAGGGAACTGGGGATCTAATGACTGCACTGTTACTTGGATGGAGCAATAAATATCCTGATAACCTTGACAAGGCAGCAGAGCTTGCTGTATCAAGCTTGCAGGCACTCTTGGTGAAGACATTGGGCGACTACGAAAGGGTTGGGTATGATCCGAAATCAAGCAGTTTGGAGATACGATTGATTCAGAGTCAGGATTACATTCGCAACCCAGAAGTCAAATACACAGCTGAAAAGTACAACTAA

Network for GWHGAAZE014742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0298	GO:0009443 pyridoxal 5'-phosphate salvage GOslim:biological_process GO:0008478 pyridoxal kinase activity GOslim:molecular_function map00750 Vitamin B6 metabolism

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08543.13	Phos_pyr_kin	165	244	4.70E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00868	pdxK, pdxY	Metabolic pathways	map01100
K00868	pdxK, pdxY	Vitamin B6 metabolism	map00750

Gene Ontology

GO term	Ontology	Name
GO:0009443	biological_process	pyridoxal 5'-phosphate salvage
GO:0008478	molecular_function	pyridoxal kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.663
	SRR3591706	second leaf	8.480
	SRR3591707	mature leaf	8.728
	SRR3591708	Shoot apex	9.821
	SRR3591709	Stem	10.082
	SRR3591710	White floral bud	68.276
	SRR3591711	White flower	32.783
	SRR3591712	Green floral bud	107.111
	SRR3591713	Yellow flower	27.662
SRP173429	SRR8316895	Juvenile bud stage	33.164
	SRR8316896	Juvenile bud stage	50.948
	SRR8316897	Juvenile bud stage	28.443
	SRR8316894	Third green stage	31.887
	SRR8316900	Third green stage	131.372
	SRR8316901	Third green stage	118.817
	SRR8316898	Complete white stage	58.911
	SRR8316899	Complete white stage	157.943
	SRR8316903	Complete white stage	69.800
	SRR8316902	Silver flowering stage	19.556
	SRR8316904	Silver flowering stage	29.644
	SRR8316905	Silver flowering stage	15.467
	SRR8316906	Gold flowering stage	25.895
	SRR8316907	Gold flowering stage	27.151
	SRR8316908	Gold flowering stage	33.604
SRP132670	SRR6706286	Control	82.528
	SRR6706287	Light intensity 50%	88.866
	SRR6706288	Light intensity 20%	102.628
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	59.633
	CNS0095593	Slightly white alabastrum(diploid) 2	78.940
	CNS0095594	Slightly white alabastrum(diploid) 3	51.619
	CNS0095595	Whole white alabastrum(diploid) 2	81.689
	CNS0095596	Whole white alabastrum(diploid) 3	96.383
	CNS0095597	Whole white alabastrum(diploid) 4	87.414
	CNS0095598	Silvery flower (diploied) 1	31.111
	CNS0095599	Silvery flower (diploied) 2	34.061
	CNS0095600	Silvery flower (diploied) 3	36.492
	CNS0095601	Golden flower (diploid) 1	29.786
	CNS0095602	Golden flower (diploid) 2	27.910
	CNS0095603	Golden flower (diploid) 3	28.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.326
	CNS0095605	Slightly white alabastrum(tetraploid) 2	65.083
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.973
	CNS0095607	Whole white alabastrum(tetraploid) 1	50.681
	CNS0095608	Whole white alabastrum(tetraploid) 2	63.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	96.803
	CNS0095610	Silvery flower (diploied) 1	45.239
	CNS0095611	Silvery flower (diploied) 2	47.255
	CNS0095612	Silvery flower (diploied) 3	29.244
	CNS0095613	Golden flower (tetraploid) 1	30.531
	CNS0095614	Golden flower (tetraploid) 2	25.994
	CNS0095615	Golden flower (tetraploid) 3	16.581
CRA001975	CRR073297	Stem 1	48.530
	CRR073298	Stem 2	43.902
	CRR073299	Stem 3	36.271
	CRR073300	Leaf 1	96.354
	CRR073301	Leaf 2	85.766
	CRR073302	Leaf 3	84.751
	CRR073303	Juvenile bud 1	118.251
	CRR073304	Juvenile bud 2	89.549
	CRR073305	Juvenile bud 3	99.734
	CRR073306	Third green 1	35.510
	CRR073307	Third green 2	26.884
	CRR073308	Third green 3	32.528
	CRR073309	Second white 1	17.174
	CRR073310	Second white 2	12.258
	CRR073311	Second white 3	9.305
	CRR073312	Silver flowering 1	6.892
	CRR073313	Silver flowering 2	5.251
	CRR073314	Silver flowering 3	8.307
	CRR073315	Gold flowering 1	14.737
	CRR073316	Gold flowering 2	25.248
	CRR073317	Gold flowering 3	8.524
	CRR073318	Tawny withering 1	18.846
	CRR073319	Tawny withering 2	24.333
	CRR073320	Tawny withering 3	17.518