Gene detail

Detail information of GWHGAAZE014795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP32959.1	0	hypothetical protein JCGZ_12990 [Jatropha curcas]
Swissprot	tr\|Q9M884\|MPI1_ARATH	0	Mannose-6-phosphate isomerase 1
trEMBL	tr\|A0A067KMB9\|A0A067KMB9_JATCU	0	Mannose-6-phosphate isomerase {ECO:0000256\|RuleBase:RU000611}
TAIR10	AT3G02570.1	1E-140	Mannose-6-phosphate isomerase, type I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19126620	19131760	+
GWHAAZE00000004	mRNA	19126620	19131760	+
GWHAAZE00000004	exon	19126620	19126967	+
GWHAAZE00000004	exon	19127670	19127837	+
GWHAAZE00000004	exon	19129513	19129713	+
GWHAAZE00000004	exon	19130310	19130576	+
GWHAAZE00000004	exon	19131384	19131760	+
GWHAAZE00000004	CDS	19126620	19126967	+
GWHAAZE00000004	CDS	19127670	19127837	+
GWHAAZE00000004	CDS	19129513	19129713	+
GWHAAZE00000004	CDS	19130310	19130576	+
GWHAAZE00000004	CDS	19131384	19131698	+
GWHAAZE00000004	three_prime_UTR	19131699	19131760	+

Transcript Sequence
>GWHTAAZE014809 ATGGAGGTTTGTGGTTCAGCAAGGCAGAGGAGGTTACAGAGACTGAAATGTTCGGTTCAGAACTACGATTGGGGACGAATCGGAAGCGAATCTAGTGTTGCCAGGCTCTTCTCGTTGAATTCTAGGGTTCAGATTGAGGAGAAGAGGCCTTATGCCGAGTTCTGGATGGGTACTCACGACTCTGGCCCTTCCTTTCTGGTTAAAAGCCTCGAGAATGGGGCTGGAGTTCCCAATGGGGGTTCGGAGAGTGGGATTGTCAGCTTGAAGTCGTGGATTGCTCAAAACCCCAATGTGCTCGGCGATAAGGTTGTCGACACGTGGGGACTTGATCTACCTTTCTTGTTCAAGGTACTTTCAGTTGCAAAAGCATTGTCAATACAAGCTCATCCGGATAAGAAAATGGCTGGGTTTCTTCATAAGTTGCAGCCTAATGTTTATAGGGATGATAATCACAAGCCTGAGATGATATTGGCACTAACGGAGTTTGAGGCCTTGTGTGGGTTTATCTGTCTTGAGGAGCTCGAGGATGTTCTTCGAAATGTTCCTGAGATTGTAGAAGTAGTTGGGAAACAAGTGTTGCAAGTCAACAAACATAATGGGGAGGAGAAAGCAAAAGCAATTCTTCGGTCAATATTCACCCAACTCATGTCTGCTAGTGAGGAGGTCATTTCCAAGGTGTTGTCGAAACTAATTAGTCGGCTCAACATGGAAAGTAAGGCAAGGAAGTTGACTGATAAGGAAGAATTAGTGTTAAGCTTAGAAAAGCAGTATCCAGATGATGTTGGGGTGATAGCGGCCTTCCTATTTAACCATGTGATACTTAAACCTGGTGAAGCTTTGTGTTTAGGGGCAAATGAACTTCACGCTTATTTATACGGAGAGTGTGTTGAATGCATGGCAACCTCTGACAATGTTGTGCGTGCTGGCCTTACTCCTAAGAAACGGGACGTCAAAATTCTATGTTCAATGCTCACATACAAGCAGGGCTTTCCTGAAATCATGCACGGAATCCAGCTGAACCCATACACGACACGATACATCCCTCCTTTCGAGGAATTTGAGGTGGACCGCTGTATTCTTAACCCAGGCAAATCAGTAGTTTTCCCTTCAGTGCCTTCACCCTCCATTTTCATCGTGATAACTGGATGGGGAAAAATGCACACAGCGTCTTCCGAGGATGCAATTAGCGAGGGAGACGTACTATTTGCCCCAGCAAGCATGGAGATCTGTGTAAGTACAACGGCCGAGTTGCACATGTACAGAGCAGGATTGAATTCCAGGTTTTTACACTTTGAATAACACAATACTACAATTCAGTTGAAAGGTAGAGTTGGCAAGTGAGAAGTGGTATAGGTACTCAG

Network for GWHGAAZE014795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01238.22	PMI_typeI	12	387	2.80E-102

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01809	manA, MPI	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009298	biological_process	GDP-mannose biosynthetic process
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004476	molecular_function	mannose-6-phosphate isomerase activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.199
	SRR3591706	second leaf	27.859
	SRR3591707	mature leaf	16.561
	SRR3591708	Shoot apex	28.592
	SRR3591709	Stem	10.588
	SRR3591710	White floral bud	26.271
	SRR3591711	White flower	21.111
	SRR3591712	Green floral bud	30.542
	SRR3591713	Yellow flower	51.312
SRP173429	SRR8316895	Juvenile bud stage	11.508
	SRR8316896	Juvenile bud stage	18.862
	SRR8316897	Juvenile bud stage	10.291
	SRR8316894	Third green stage	7.208
	SRR8316900	Third green stage	26.771
	SRR8316901	Third green stage	29.397
	SRR8316898	Complete white stage	10.337
	SRR8316899	Complete white stage	48.172
	SRR8316903	Complete white stage	15.384
	SRR8316902	Silver flowering stage	8.893
	SRR8316904	Silver flowering stage	12.013
	SRR8316905	Silver flowering stage	7.287
	SRR8316906	Gold flowering stage	32.793
	SRR8316907	Gold flowering stage	35.348
	SRR8316908	Gold flowering stage	25.546
SRP132670	SRR6706286	Control	18.137
	SRR6706287	Light intensity 50%	16.822
	SRR6706288	Light intensity 20%	19.098
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.626
	CNS0095593	Slightly white alabastrum(diploid) 2	22.282
	CNS0095594	Slightly white alabastrum(diploid) 3	19.319
	CNS0095595	Whole white alabastrum(diploid) 2	26.270
	CNS0095596	Whole white alabastrum(diploid) 3	26.842
	CNS0095597	Whole white alabastrum(diploid) 4	32.006
	CNS0095598	Silvery flower (diploied) 1	12.761
	CNS0095599	Silvery flower (diploied) 2	18.249
	CNS0095600	Silvery flower (diploied) 3	20.813
	CNS0095601	Golden flower (diploid) 1	21.147
	CNS0095602	Golden flower (diploid) 2	30.673
	CNS0095603	Golden flower (diploid) 3	31.440
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.396
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.764
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.645
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.748
	CNS0095610	Silvery flower (diploied) 1	15.169
	CNS0095611	Silvery flower (diploied) 2	15.193
	CNS0095612	Silvery flower (diploied) 3	12.668
	CNS0095613	Golden flower (tetraploid) 1	25.639
	CNS0095614	Golden flower (tetraploid) 2	33.091
	CNS0095615	Golden flower (tetraploid) 3	35.546
CRA001975	CRR073297	Stem 1	20.887
	CRR073298	Stem 2	23.785
	CRR073299	Stem 3	24.166
	CRR073300	Leaf 1	28.985
	CRR073301	Leaf 2	22.924
	CRR073302	Leaf 3	26.798
	CRR073303	Juvenile bud 1	23.912
	CRR073304	Juvenile bud 2	31.312
	CRR073305	Juvenile bud 3	23.087
	CRR073306	Third green 1	6.882
	CRR073307	Third green 2	9.707
	CRR073308	Third green 3	8.528
	CRR073309	Second white 1	13.983
	CRR073310	Second white 2	16.626
	CRR073311	Second white 3	15.305
	CRR073312	Silver flowering 1	19.054
	CRR073313	Silver flowering 2	16.515
	CRR073314	Silver flowering 3	20.610
	CRR073315	Gold flowering 1	29.788
	CRR073316	Gold flowering 2	39.427
	CRR073317	Gold flowering 3	30.092
	CRR073318	Tawny withering 1	27.477
	CRR073319	Tawny withering 2	25.789
	CRR073320	Tawny withering 3	28.790