Gene detail

Detail information of GWHGAAZE014805

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280096.2	6.94664E-97	PREDICTED: uncharacterized protein LOC100249716 [Vitis vinifera]
trEMBL	tr\|A0A061EIJ4\|A0A061EIJ4_THECC	5E-92	Regulator of Vps4 activity in the MVB pathway protein, putative {ECO:0000313\|EMBL:EOY04212.1}
TAIR10	AT1G13340.1	1E-45	Regulator of Vps4 activity in the MVB pathway protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	19394778	19396646	+
GWHAAZE00000004	mRNA	19394778	19396646	+
GWHAAZE00000004	exon	19394778	19394966	+
GWHAAZE00000004	exon	19395097	19395200	+
GWHAAZE00000004	exon	19395325	19395496	+
GWHAAZE00000004	exon	19395578	19395700	+
GWHAAZE00000004	exon	19396053	19396646	+
GWHAAZE00000004	CDS	19394778	19394966	+
GWHAAZE00000004	CDS	19395097	19395200	+
GWHAAZE00000004	CDS	19395325	19395496	+
GWHAAZE00000004	CDS	19395578	19395700	+
GWHAAZE00000004	CDS	19396053	19396646	+

Transcript Sequence
>GWHTAAZE014819 ATGGGGAAGAAATTGAATGTCTTGCTACCAAGAAGAACCTCCAAAACATCTAAGCTCGAATCGCTCGCTAATTTAGCCATCTCACGCATTAGAATTCTCAAGAACCAGCGCTACAGCCGGTTCACTCATGCCGAGTCCGATATCATCCAGCTACTCAACCATGGTGACCAATCAAGCGCTCTCCTTCGGGTTGAACATGTTATCAAGGAGCAGAATGCGATAGAAGCGTTTGTGATGATAGGAAGCTACTGCCTTCTCCTGACAGAAAGTGTTGAACTAGTCCAAAACTGCAGGAAATGTCCTGATCAACTTAAGGAGACAATATCAAGCTTGATTTTTGCAGCTTCAAGATGTGGAGAATTCCCCGAGCTTCAAAAGATTCGTGAGAATTTGGCTTCACAATTTGGGAACGAATTTGCAGCTTGTGCTGTTGAGTTGAGAAACAACTGCGGAGTAAATCCTATGATGATACAGAAGCTTTCAACAAGACAAGCGAGCTTGGAAAGCAGACAGGCACTACTAGTGCAAATCGCTTCAGAAAATGGGATCCCCCTTCATCTCAAGGATGATGCATCTGACATCACCAAGGAGAGACATGATAGCAAACAGTGGCTTGAGCAAACAGAAGCAGACTTATATGATCCTGAAGATGGAGCAGCTACCCAAGATTTCAATACAGAAATAAGTCAAATAACCAAGGATGAACACGTTTCTGATTTAATGAAAGCAAGTGATAAGTACAGTGATGTGGCCGCTGCAGCACAAGAGCTGTTTGATCAATCTGAATCATCGGATGAAGATCCAGATGATCATTGTAGGCCCATTCACCAAGGAACCCTAGTCGACTCTAATGGGTTTATCAGACCTAATATCAAGATTCATGCAGCTTTAAAGGATATCAAGCGCTCAAACAAAGGATTTGGCATTAGCAAGATGCATCCTAGTGAAAGGTTCAGCTCTGAATCAGAATGTGAAGAAATGACAGAAAACAGCGATGGAAGTAGTCTTATAGAGATAAGACAGAGCAACAGTAAAGCTGGACAAGAGGAAAAATTCTCTCCTTCAGAGTTCGAATCGGAAGGTGATGATGAGGCCGACCATGATATGAGTTCAGATAAGAAGTCTGATTTGCCCTTGTATGAATTCTCCAAAATCAGACAGTACAAGAACACATACAGATGA

Network for GWHGAAZE014805

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03398.15	Ist1	24	184	1.50E-45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K19476	IST1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0015031	biological_process	protein transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.283
	SRR3591706	second leaf	20.002
	SRR3591707	mature leaf	52.603
	SRR3591708	Shoot apex	3.253
	SRR3591709	Stem	10.064
	SRR3591710	White floral bud	3.283
	SRR3591711	White flower	3.084
	SRR3591712	Green floral bud	3.002
	SRR3591713	Yellow flower	1.652
SRP173429	SRR8316895	Juvenile bud stage	1.035
	SRR8316896	Juvenile bud stage	1.939
	SRR8316897	Juvenile bud stage	1.418
	SRR8316894	Third green stage	0.903
	SRR8316900	Third green stage	1.305
	SRR8316901	Third green stage	1.669
	SRR8316898	Complete white stage	1.087
	SRR8316899	Complete white stage	4.613
	SRR8316903	Complete white stage	1.419
	SRR8316902	Silver flowering stage	1.169
	SRR8316904	Silver flowering stage	1.691
	SRR8316905	Silver flowering stage	0.545
	SRR8316906	Gold flowering stage	3.319
	SRR8316907	Gold flowering stage	1.869
	SRR8316908	Gold flowering stage	3.418
SRP132670	SRR6706286	Control	0.799
	SRR6706287	Light intensity 50%	0.675
	SRR6706288	Light intensity 20%	0.896
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.792
	CNS0095593	Slightly white alabastrum(diploid) 2	1.452
	CNS0095594	Slightly white alabastrum(diploid) 3	1.433
	CNS0095595	Whole white alabastrum(diploid) 2	0.644
	CNS0095596	Whole white alabastrum(diploid) 3	1.162
	CNS0095597	Whole white alabastrum(diploid) 4	1.273
	CNS0095598	Silvery flower (diploied) 1	2.562
	CNS0095599	Silvery flower (diploied) 2	0.832
	CNS0095600	Silvery flower (diploied) 3	1.558
	CNS0095601	Golden flower (diploid) 1	1.740
	CNS0095602	Golden flower (diploid) 2	1.264
	CNS0095603	Golden flower (diploid) 3	1.095
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.821
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.733
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.300
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.513
	CNS0095610	Silvery flower (diploied) 1	1.454
	CNS0095611	Silvery flower (diploied) 2	1.203
	CNS0095612	Silvery flower (diploied) 3	0.727
	CNS0095613	Golden flower (tetraploid) 1	1.865
	CNS0095614	Golden flower (tetraploid) 2	3.664
	CNS0095615	Golden flower (tetraploid) 3	0.547
CRA001975	CRR073297	Stem 1	2.136
	CRR073298	Stem 2	1.496
	CRR073299	Stem 3	0.476
	CRR073300	Leaf 1	0.756
	CRR073301	Leaf 2	1.507
	CRR073302	Leaf 3	0.291
	CRR073303	Juvenile bud 1	0.345
	CRR073304	Juvenile bud 2	0.886
	CRR073305	Juvenile bud 3	0.479
	CRR073306	Third green 1	0.573
	CRR073307	Third green 2	0.027
	CRR073308	Third green 3	0.336
	CRR073309	Second white 1	0.219
	CRR073310	Second white 2	0.638
	CRR073311	Second white 3	0.347
	CRR073312	Silver flowering 1	0.229
	CRR073313	Silver flowering 2	0.234
	CRR073314	Silver flowering 3	0.765
	CRR073315	Gold flowering 1	26.850
	CRR073316	Gold flowering 2	27.043
	CRR073317	Gold flowering 3	13.237
	CRR073318	Tawny withering 1	1.929
	CRR073319	Tawny withering 2	5.097
	CRR073320	Tawny withering 3	1.242