Gene detail

Detail information of GWHGAAZE014905

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001267937.1	2.9556E-122	flowering-related B-class MADS-box protein [Vitis vinifera]
Swissprot	tr\|P23706\|DEFA_ANTMA	6E-91	Floral homeotic protein DEFICIENS
trEMBL	tr\|Q003J2\|Q003J2_VITVI	1E-122	Flowering-related B-class MADS-box protein {ECO:0000313\|EMBL:ABI98021.1}
TAIR10	AT3G54340.1	1E-53	K-box region and MADS-box transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21322982	21326145	+
GWHAAZE00000004	mRNA	21322982	21326145	+
GWHAAZE00000004	exon	21322982	21323191	+
GWHAAZE00000004	exon	21324258	21324324	+
GWHAAZE00000004	exon	21324428	21324489	+
GWHAAZE00000004	exon	21324610	21324709	+
GWHAAZE00000004	exon	21325160	21325201	+
GWHAAZE00000004	exon	21325317	21325361	+
GWHAAZE00000004	exon	21325548	21326145	+
GWHAAZE00000004	five_prime_UTR	21322982	21323003	+
GWHAAZE00000004	CDS	21323004	21323191	+
GWHAAZE00000004	CDS	21324258	21324324	+
GWHAAZE00000004	CDS	21324428	21324489	+
GWHAAZE00000004	CDS	21324610	21324709	+
GWHAAZE00000004	CDS	21325160	21325201	+
GWHAAZE00000004	CDS	21325317	21325361	+
GWHAAZE00000004	CDS	21325548	21325733	+
GWHAAZE00000004	three_prime_UTR	21325734	21326145	+

Transcript Sequence
>GWHTAAZE014919 AAGAAGAAACAGAGAGTGAAAAATGGGGAGAGGAAAGATAGAGATCAAGAAGATTGAAAATCGGACTAACAGGCAAGTGACATACTCAAAGAGAAGAAATGGGATCTTCAAAAAAGCACAAGAGCTAACTGTACTGTGTGACGCTAAGGTCTCCCTTATCATGTTCTCTAATACTGGCAAATTCCACGAGTACACCAGTCCTAACACTACGACTAAAAAGATCTATGATCAATATCAGAGGACTCTCGGTTGTGACCTATGGATCACGCATTACGAGAGGATGCAAGAACACTTTAGAAAACTGACAGAGATCAATAATAGACTGAGGAAAGACATCAGGCAGAGAATGGGTGATGAATTGAATGATCTAGACTTGGATGAATTGCGCGGTCTTGAGCAAAAGATGGATGATTCCCTCGCCATTGTACGCGAGAGGAAGTACCACGTGATCAAAACACAGACAGATACGTACAAGAAGAAGGTAAGGAACTTGGAGGAAAGATATGGAACTCTCCTACTCGACTTTGAAGCAAAATGCGAGGTAGATCCTCAGTGTGGATTAGAGGAACATGAGGGAGACTATGAATCAGTGGTGGCGTTTGCAAATGGTGTGACCAATCTATTTTCTTTTAGGCTGCACCCGACCCACTCTGGTCTTGGCCATGGAAGTGGCGGATTTGTGTCCCATGACCATGACCTGCGCCTTGGTTGAGGAGCAATGGGGGGTCAATTTCCTCTTCAACCTAATTATAGTTTATTTATATATATAGTTGGCTTAAATACTAGGTGTTTAATTTGGTTATATATATATATTTATACAGTGCGTCTCTTATATGAACGATCCGTTCAAGGACCATATATAATTTGGCGACAAAATTTCATTACCAAAAGAGATTCACTGTAGGTATATATATAACACTTGTCTACTTCCTGTGTATGAAGTTTATCATATATTTACTAGAAATCTAATACCAGAAACTATCTTTTCTGGTGGCTTCTTTCTAGCTTCATGGATCTTCTGTAGAAGTATGTATGTAATATAATTGTGATTGTAAAGATTGTTCTATGTTTTTATGTAATTTTATGACTTTTTTTTTAATGATAATTGTTGAGTTGTAATTTAA

Network for GWHGAAZE014905

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00319.19	SRF-TF	10	57	4.60E-24
PF01486.18	K-box	82	164	3.70E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MADS-MIKC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0045944	biological_process	positive regulation of transcription by RNA polymerase II
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding
GO:0046983	molecular_function	protein dimerization activity
GO:0000977	molecular_function	RNA polymerase II transcription regulatory region sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.672
	SRR3591706	second leaf	4.789
	SRR3591707	mature leaf	6.988
	SRR3591708	Shoot apex	3.746
	SRR3591709	Stem	8.931
	SRR3591710	White floral bud	230.313
	SRR3591711	White flower	299.079
	SRR3591712	Green floral bud	361.040
	SRR3591713	Yellow flower	391.450
SRP173429	SRR8316895	Juvenile bud stage	111.012
	SRR8316896	Juvenile bud stage	174.323
	SRR8316897	Juvenile bud stage	96.096
	SRR8316894	Third green stage	79.484
	SRR8316900	Third green stage	303.648
	SRR8316901	Third green stage	270.674
	SRR8316898	Complete white stage	153.030
	SRR8316899	Complete white stage	563.759
	SRR8316903	Complete white stage	212.421
	SRR8316902	Silver flowering stage	73.360
	SRR8316904	Silver flowering stage	98.375
	SRR8316905	Silver flowering stage	53.318
	SRR8316906	Gold flowering stage	137.803
	SRR8316907	Gold flowering stage	137.319
	SRR8316908	Gold flowering stage	124.104
SRP132670	SRR6706286	Control	234.844
	SRR6706287	Light intensity 50%	257.145
	SRR6706288	Light intensity 20%	278.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	94.673
	CNS0095593	Slightly white alabastrum(diploid) 2	108.452
	CNS0095594	Slightly white alabastrum(diploid) 3	84.563
	CNS0095595	Whole white alabastrum(diploid) 2	99.015
	CNS0095596	Whole white alabastrum(diploid) 3	107.287
	CNS0095597	Whole white alabastrum(diploid) 4	111.255
	CNS0095598	Silvery flower (diploied) 1	76.197
	CNS0095599	Silvery flower (diploied) 2	94.095
	CNS0095600	Silvery flower (diploied) 3	294.721
	CNS0095601	Golden flower (diploid) 1	64.520
	CNS0095602	Golden flower (diploid) 2	227.476
	CNS0095603	Golden flower (diploid) 3	221.481
	CNS0095604	Slightly white alabastrum(tetraploid) 1	148.541
	CNS0095605	Slightly white alabastrum(tetraploid) 2	129.878
	CNS0095606	Slightly white alabastrum(tetraploid) 3	288.029
	CNS0095607	Whole white alabastrum(tetraploid) 1	76.247
	CNS0095608	Whole white alabastrum(tetraploid) 2	106.745
	CNS0095609	Whole white alabastrum(tetraploid) 3	272.359
	CNS0095610	Silvery flower (diploied) 1	289.335
	CNS0095611	Silvery flower (diploied) 2	295.269
	CNS0095612	Silvery flower (diploied) 3	183.982
	CNS0095613	Golden flower (tetraploid) 1	201.032
	CNS0095614	Golden flower (tetraploid) 2	233.424
	CNS0095615	Golden flower (tetraploid) 3	255.403
CRA001975	CRR073297	Stem 1	230.903
	CRR073298	Stem 2	236.379
	CRR073299	Stem 3	264.591
	CRR073300	Leaf 1	348.337
	CRR073301	Leaf 2	287.658
	CRR073302	Leaf 3	454.560
	CRR073303	Juvenile bud 1	393.284
	CRR073304	Juvenile bud 2	483.537
	CRR073305	Juvenile bud 3	244.653
	CRR073306	Third green 1	44.148
	CRR073307	Third green 2	43.937
	CRR073308	Third green 3	41.673
	CRR073309	Second white 1	46.177
	CRR073310	Second white 2	67.535
	CRR073311	Second white 3	40.591
	CRR073312	Silver flowering 1	47.651
	CRR073313	Silver flowering 2	30.229
	CRR073314	Silver flowering 3	44.697
	CRR073315	Gold flowering 1	1.323
	CRR073316	Gold flowering 2	0.826
	CRR073317	Gold flowering 3	1.125
	CRR073318	Tawny withering 1	1.266
	CRR073319	Tawny withering 2	2.123
	CRR073320	Tawny withering 3	0.880