Gene detail

Detail information of GWHGAAZE014932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007046708.1	2.09672E-64	Homeodomain-like superfamily protein, putative [Theobroma cacao]
Swissprot	tr\|Q8LL11\|WUS_PETHY	3E-59	Protein WUSCHEL
trEMBL	tr\|A0A061DFE2\|A0A061DFE2_THECC	8E-65	Homeodomain-like superfamily protein, putative {ECO:0000313\|EMBL:EOX90865.1}
TAIR10	AT2G17950.1	3E-30	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	21823151	21825991	+
GWHAAZE00000004	mRNA	21823151	21825991	+
GWHAAZE00000004	exon	21823151	21823415	+
GWHAAZE00000004	exon	21824569	21824663	+
GWHAAZE00000004	exon	21825631	21825676	+
GWHAAZE00000004	exon	21825813	21825991	+
GWHAAZE00000004	CDS	21823151	21823415	+
GWHAAZE00000004	CDS	21824569	21824663	+
GWHAAZE00000004	CDS	21825631	21825676	+
GWHAAZE00000004	CDS	21825813	21825991	+

Transcript Sequence
>GWHTAAZE014946 ATGGAACCTCAACAAAATCAAAATCAACAACAAAACGAGGAAGGTGGAAACAAGAGTAACACTAGTAGTGGATACTTATGTAGGCAGAGTAGTACAAGATGGACACCAACAAGCGAACAGATAAGGATACTCAAAGAGCTTTACTACAACAATGGAGTCAGGTCCCCAAGTGCAGAGCAGATACAGAGGATCTCTGCTCGCCTCAGGCAGTACGGCAAGATTGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCACAAAGCTCGGGTTTCATCTTCTTGCTCTTCATCTGGAGTGCTTGCTGTTTATCAAGGGGGGAACTATGGGTATGGATCTGTGGCCATGGAGAAGAGTTTTAGGGATTGTTCAATATCACCAAGAGATCTTCATAGCAGTGGTGGATCGGAGATCGAAACCCTACCTCTTTTCCCCATGCATGGTGAAGATAGCACCGTTAAGCCAGAATCGGATGGTTATTACAGCAGTGGCTGGTACCGGCCCAACAATGGTGGGGCCGGTTCTCGTACTTCACTTGAGCTTAGCCTCAACTCCTATATGACTGGCCGGCCCACCGGTTCTCACTAA

Network for GWHGAAZE014932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.30	Homeodomain	32	89	4.10E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-WOX

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	2.475
	SRR3591711	White flower	0.627
	SRR3591712	Green floral bud	11.971
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	3.011
	SRR8316896	Juvenile bud stage	8.009
	SRR8316897	Juvenile bud stage	2.570
	SRR8316894	Third green stage	4.921
	SRR8316900	Third green stage	15.434
	SRR8316901	Third green stage	16.655
	SRR8316898	Complete white stage	2.210
	SRR8316899	Complete white stage	24.837
	SRR8316903	Complete white stage	5.579
	SRR8316902	Silver flowering stage	0.112
	SRR8316904	Silver flowering stage	0.391
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	18.939
	SRR6706287	Light intensity 50%	17.611
	SRR6706288	Light intensity 20%	14.912
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.849
	CNS0095593	Slightly white alabastrum(diploid) 2	3.949
	CNS0095594	Slightly white alabastrum(diploid) 3	3.163
	CNS0095595	Whole white alabastrum(diploid) 2	1.814
	CNS0095596	Whole white alabastrum(diploid) 3	0.901
	CNS0095597	Whole white alabastrum(diploid) 4	2.291
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.020
	CNS0095600	Silvery flower (diploied) 3	0.549
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.063
	CNS0095603	Golden flower (diploid) 3	0.143
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.970
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.628
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.068
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.732
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.300
	CNS0095610	Silvery flower (diploied) 1	0.416
	CNS0095611	Silvery flower (diploied) 2	0.066
	CNS0095612	Silvery flower (diploied) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.003
CRA001975	CRR073297	Stem 1	3.251
	CRR073298	Stem 2	6.530
	CRR073299	Stem 3	1.743
	CRR073300	Leaf 1	9.553
	CRR073301	Leaf 2	12.932
	CRR073302	Leaf 3	10.613
	CRR073303	Juvenile bud 1	6.269
	CRR073304	Juvenile bud 2	5.162
	CRR073305	Juvenile bud 3	23.258
	CRR073306	Third green 1	0.013
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.150
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.140
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.063
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000