Gene detail

Detail information of GWHGAAZE014948

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265670.1	1.2907E-109	PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Vitis vinifera]
Swissprot	tr\|Q9M622\|RMR1_ARATH	3E-76	Receptor homology region, transmembrane domain- and RING domain-containing protein 1 (Precursor)
trEMBL	tr\|F6GWM0\|F6GWM0_VITVI	9E-104	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB44355.1}
TAIR10	AT5G66160.1	1E-62	receptor homology region transmembrane domain ring H2 motif protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	22125864	22127418	+
GWHAAZE00000004	mRNA	22125864	22127418	+
GWHAAZE00000004	exon	22125864	22126092	+
GWHAAZE00000004	exon	22126794	22127177	+
GWHAAZE00000004	exon	22127330	22127418	+
GWHAAZE00000004	CDS	22125864	22126092	+
GWHAAZE00000004	CDS	22126794	22127177	+
GWHAAZE00000004	CDS	22127330	22127418	+

Transcript Sequence
>GWHTAAZE014962 GTAGGAGTTAACAGTTCTGGAATATGTGGAGCTTTGCATGTGGCAGATCCACTGGATGCTTGTTCTTCGCTGCTGAATGAATTTGGAGATGAAGAGACTGCAAGTGTGAGAATTGCTTTGATAGTGAGGGGGAAATGTGCTTTCGAGGAAAAAATTCGGCATGCTCAAGGCGGTGGCTTTGATGCTGCAATTGTATATGATGATCAAGATAAGCGGAATTTGGTTTCCATGATTGGAAGCTCCGAGGGAATATGGGTGCACGCAGTCTTTGTTTCAAATTTTGCGGGTGAGATCTTGAAGAGGCATGCTCGAGCAGAGGAAGGTGAATGTTGCATCATCTCATCTCTGGAAGAAACATCTTGGACAGTGCTAGTAATATCATTTATCTCCCTGCTCATAATGGTTTTTGTCCTTACTTTATTCTTTCTTATTCGGAATCGTCGACAAAATCAAAGAGGTACAAGTCGCCTTGTCGATAGCAAGGTGGTTGAAGTACTTCCCTGCTTCACATTCTGCTCTGCTTATCAAAGCAGCTACATAATGGAGACTTGCACGATCTGTCTCGAGGATTATAAGGACGGGGAAAATCTCAGAGTTCTCCCGTGCCATCACGAATTTCATGCTAGCTGCGTGGACTTATGGTTGACCAAATGGGAAACATTCTGCCCGGTTTGCAAGCATGATATGAGTAGTACAGTTTGA

Network for GWHGAAZE014948

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02225.23	PA	17	99	1.10E-07
PF13639.7	zf-RING_2	183	226	9.80E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.854
	SRR3591706	second leaf	43.208
	SRR3591707	mature leaf	55.615
	SRR3591708	Shoot apex	43.894
	SRR3591709	Stem	52.825
	SRR3591710	White floral bud	57.294
	SRR3591711	White flower	56.601
	SRR3591712	Green floral bud	28.072
	SRR3591713	Yellow flower	68.239
SRP173429	SRR8316895	Juvenile bud stage	16.373
	SRR8316896	Juvenile bud stage	15.845
	SRR8316897	Juvenile bud stage	17.071
	SRR8316894	Third green stage	6.690
	SRR8316900	Third green stage	13.404
	SRR8316901	Third green stage	13.549
	SRR8316898	Complete white stage	8.492
	SRR8316899	Complete white stage	20.410
	SRR8316903	Complete white stage	19.367
	SRR8316902	Silver flowering stage	15.839
	SRR8316904	Silver flowering stage	21.441
	SRR8316905	Silver flowering stage	13.799
	SRR8316906	Gold flowering stage	38.613
	SRR8316907	Gold flowering stage	31.891
	SRR8316908	Gold flowering stage	63.313
SRP132670	SRR6706286	Control	17.468
	SRR6706287	Light intensity 50%	19.049
	SRR6706288	Light intensity 20%	18.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.288
	CNS0095593	Slightly white alabastrum(diploid) 2	19.273
	CNS0095594	Slightly white alabastrum(diploid) 3	13.988
	CNS0095595	Whole white alabastrum(diploid) 2	14.502
	CNS0095596	Whole white alabastrum(diploid) 3	11.475
	CNS0095597	Whole white alabastrum(diploid) 4	10.093
	CNS0095598	Silvery flower (diploied) 1	28.566
	CNS0095599	Silvery flower (diploied) 2	30.290
	CNS0095600	Silvery flower (diploied) 3	28.526
	CNS0095601	Golden flower (diploid) 1	27.531
	CNS0095602	Golden flower (diploid) 2	27.186
	CNS0095603	Golden flower (diploid) 3	26.931
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.491
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.275
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.334
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.410
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.162
	CNS0095610	Silvery flower (diploied) 1	72.871
	CNS0095611	Silvery flower (diploied) 2	61.020
	CNS0095612	Silvery flower (diploied) 3	89.379
	CNS0095613	Golden flower (tetraploid) 1	81.417
	CNS0095614	Golden flower (tetraploid) 2	77.470
	CNS0095615	Golden flower (tetraploid) 3	71.422
CRA001975	CRR073297	Stem 1	28.260
	CRR073298	Stem 2	19.239
	CRR073299	Stem 3	10.287
	CRR073300	Leaf 1	16.178
	CRR073301	Leaf 2	19.404
	CRR073302	Leaf 3	8.454
	CRR073303	Juvenile bud 1	7.956
	CRR073304	Juvenile bud 2	6.761
	CRR073305	Juvenile bud 3	6.497
	CRR073306	Third green 1	7.893
	CRR073307	Third green 2	7.874
	CRR073308	Third green 3	6.949
	CRR073309	Second white 1	11.777
	CRR073310	Second white 2	22.242
	CRR073311	Second white 3	13.204
	CRR073312	Silver flowering 1	15.018
	CRR073313	Silver flowering 2	13.459
	CRR073314	Silver flowering 3	12.210
	CRR073315	Gold flowering 1	24.025
	CRR073316	Gold flowering 2	25.951
	CRR073317	Gold flowering 3	12.995
	CRR073318	Tawny withering 1	15.032
	CRR073319	Tawny withering 2	12.069
	CRR073320	Tawny withering 3	16.372