Gene detail

Detail information of GWHGAAZE015014

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006340824.1	2.9074E-176	PREDICTED: probable serine acetyltransferase 2-like isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q10S58\|SAT2_ORYSJ	2E-146	Probable serine acetyltransferase 2
trEMBL	tr\|M0ZMP0\|M0ZMP0_SOLTU	6E-177	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400003990}
TAIR10	AT4G35640.1	1E-109	serine acetyltransferase 3;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	23266237	23270773	+
GWHAAZE00000004	mRNA	23266237	23270773	+
GWHAAZE00000004	exon	23266237	23266455	+
GWHAAZE00000004	exon	23267624	23267851	+
GWHAAZE00000004	exon	23267970	23268029	+
GWHAAZE00000004	exon	23268524	23268619	+
GWHAAZE00000004	exon	23268724	23268748	+
GWHAAZE00000004	exon	23269186	23269280	+
GWHAAZE00000004	exon	23270420	23270586	+
GWHAAZE00000004	exon	23270677	23270773	+
GWHAAZE00000004	CDS	23266237	23266455	+
GWHAAZE00000004	CDS	23267624	23267851	+
GWHAAZE00000004	CDS	23267970	23268029	+
GWHAAZE00000004	CDS	23268524	23268619	+
GWHAAZE00000004	CDS	23268724	23268748	+
GWHAAZE00000004	CDS	23269186	23269280	+
GWHAAZE00000004	CDS	23270420	23270586	+
GWHAAZE00000004	CDS	23270677	23270773	+

Transcript Sequence
>GWHTAAZE015028 ATGCTTTCCACTCACGCACTTCTCCAAGAAGAAGAACAAGGGGTCACCAAAATTTCTCAATCGAAATCCATGAATTACACCTTGGAGAAGGTCTTTCCGCTTTACGCAATGGTGGGGCTCTCCGAGCCCGACCCGAATTTGGTTTCTTCGTTTCCCAATTCGGGTTCCACGGTGGGCGACCCGATTTGGGACGCTGTTAGAGAAGACGCTAAGTTAGAGTTACAGTTGGTGCTGCCCTTCATATTTCAGGCAGACAAGGAACCAATTTTAAGCAGCTTCTTGTATGCCAGCGTTTTGTCACATGATTGTTTGGAGCGGGCATTGGGTTTTGTGCTTGCCAATCGACTCCAAAATCCCACACTCTTGGCAACCCAACTAACAGATATATTCTGCGATGTACTGATGCATGATCGCGGCATTCAACGTTCGATTCGCATGGATTTACAGGCACTTAAAGATAGAGATCCTTCCTGTTTGTCATATTGCTCGGCTCTGTTATACCTTAAGGGTTACCATTCTTTGCAAACATATCGAGTAGCACACACATTGTGGAACCAAGGGCGCAAAGTGTTGGCTTTGGCATTACAAAGTCGAATTAGTGAGGTTTTTGGAGTTGACATTCATCCTGCTGCAAAAATTGGAGAGGGAATACTTTTGGATCATGGGACCGGTGTAGTTATTGGTGAAACTGCCGTTGTAGGAAATAGAGTTTCACTAATGCAGGGTGTAACTTTAGGAGGAACTGGAAACGAAATTGGCAATCGTCATCCAAAAGTTGGTGATGGGGCGCTAATTGGAGCTAGTGCAACTATTCTTGGTAATATAAAAATAGGTGAAGGTGCAATGATAGCTGCCGGATCCCTTGTGTTGAAGGATGTTTCTCCACACAGCATGATGGCTGGAATACCAGCAAAAGTGATTGGGTATGTAGATGAGCAAGATCCATCTTTAACAATGAAGCATGGTACGTCAAATATACTGGCATGA

Network for GWHGAAZE015014

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06426.15	SATase_N	83	176	2.70E-32
PF00132.25	Hexapep	256	289	1.50E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00640	cysE	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Biosynthesis of amino acids	map01230
		Sulfur metabolism	map00920
		Cysteine and methionine metabolism	map00270
		Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

GO term	Ontology	Name
GO:0006535	biological_process	cysteine biosynthetic process from serine
GO:0005737	cellular_component	cytoplasm
GO:0009001	molecular_function	serine O-acetyltransferase activity
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.221
	SRR3591706	second leaf	57.110
	SRR3591707	mature leaf	51.425
	SRR3591708	Shoot apex	40.589
	SRR3591709	Stem	17.670
	SRR3591710	White floral bud	21.074
	SRR3591711	White flower	17.043
	SRR3591712	Green floral bud	27.963
	SRR3591713	Yellow flower	12.245
SRP173429	SRR8316895	Juvenile bud stage	26.370
	SRR8316896	Juvenile bud stage	31.299
	SRR8316897	Juvenile bud stage	15.692
	SRR8316894	Third green stage	15.102
	SRR8316900	Third green stage	32.277
	SRR8316901	Third green stage	30.316
	SRR8316898	Complete white stage	6.126
	SRR8316899	Complete white stage	29.256
	SRR8316903	Complete white stage	9.843
	SRR8316902	Silver flowering stage	4.264
	SRR8316904	Silver flowering stage	7.694
	SRR8316905	Silver flowering stage	2.787
	SRR8316906	Gold flowering stage	9.946
	SRR8316907	Gold flowering stage	7.169
	SRR8316908	Gold flowering stage	7.227
SRP132670	SRR6706286	Control	41.479
	SRR6706287	Light intensity 50%	43.295
	SRR6706288	Light intensity 20%	47.040
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.996
	CNS0095593	Slightly white alabastrum(diploid) 2	34.276
	CNS0095594	Slightly white alabastrum(diploid) 3	38.913
	CNS0095595	Whole white alabastrum(diploid) 2	32.805
	CNS0095596	Whole white alabastrum(diploid) 3	34.173
	CNS0095597	Whole white alabastrum(diploid) 4	24.900
	CNS0095598	Silvery flower (diploied) 1	31.222
	CNS0095599	Silvery flower (diploied) 2	21.490
	CNS0095600	Silvery flower (diploied) 3	17.732
	CNS0095601	Golden flower (diploid) 1	25.374
	CNS0095602	Golden flower (diploid) 2	22.001
	CNS0095603	Golden flower (diploid) 3	21.751
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.234
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.736
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.501
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.709
	CNS0095610	Silvery flower (diploied) 1	13.533
	CNS0095611	Silvery flower (diploied) 2	19.030
	CNS0095612	Silvery flower (diploied) 3	15.622
	CNS0095613	Golden flower (tetraploid) 1	10.021
	CNS0095614	Golden flower (tetraploid) 2	15.103
	CNS0095615	Golden flower (tetraploid) 3	7.817
CRA001975	CRR073297	Stem 1	47.660
	CRR073298	Stem 2	43.299
	CRR073299	Stem 3	41.110
	CRR073300	Leaf 1	39.169
	CRR073301	Leaf 2	34.240
	CRR073302	Leaf 3	39.408
	CRR073303	Juvenile bud 1	33.168
	CRR073304	Juvenile bud 2	22.059
	CRR073305	Juvenile bud 3	21.590
	CRR073306	Third green 1	5.687
	CRR073307	Third green 2	4.130
	CRR073308	Third green 3	4.753
	CRR073309	Second white 1	3.350
	CRR073310	Second white 2	3.993
	CRR073311	Second white 3	2.347
	CRR073312	Silver flowering 1	3.001
	CRR073313	Silver flowering 2	3.413
	CRR073314	Silver flowering 3	3.621
	CRR073315	Gold flowering 1	34.596
	CRR073316	Gold flowering 2	46.721
	CRR073317	Gold flowering 3	27.460
	CRR073318	Tawny withering 1	18.356
	CRR073319	Tawny withering 2	20.901
	CRR073320	Tawny withering 3	16.898