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Detail information of GWHGAAZE015047
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
KHN25814.1
1.8133E-47
Exosome complex exonuclease RRP44 [Glycine soja]
trEMBL
tr|I1KB85|I1KB85_SOYBN
8E-48
Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14870.4}
TAIR10
AT2G17510.1
6E-28
ribonuclease II family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000004
gene
23835571
23836819
+
GWHAAZE00000004
mRNA
23835571
23836819
+
GWHAAZE00000004
exon
23835571
23835798
+
GWHAAZE00000004
exon
23836333
23836470
+
GWHAAZE00000004
exon
23836553
23836819
+
GWHAAZE00000004
five_prime_UTR
23835571
23835741
+
GWHAAZE00000004
CDS
23835742
23835798
+
GWHAAZE00000004
CDS
23836333
23836470
+
GWHAAZE00000004
CDS
23836553
23836819
+
Transcript Sequence
>GWHTAAZE015061 GCAATGTTGTGTTTGCTGGGCCGAGAAAAAGTCCGAATCATTGATTGGGTTGCAAAGCCGTCCGCCATTAGAGCAGCAGAGGTCACCTTCATGTGAAACTAAAATCTAGAGAGAATCGAATCAAATACATTAAAGAAGGGTTCGAGTTTAAAAGCAGAGCTTTGGCGAAAAATGTTACAGAGCAAATCATTCGTCGTCAGAAAAACAAGGCAAGGGAAAGTAGTCAAGGCCGTTCGAGAACACTATCTTAGAGATGATACATATCGCAGAGCTTGGTTCTGTAAAGTCTGTGATACTAAAGATTCACGCTTGAGCTCATCTGCTTTGACAGTTCTTGTTGTTGACACTAATGTTGTTCACAATCAGATTGTTTTGCTTGAGAATCTGGCGAATGATGAGGTTGTGGTGCTATCGGTGGTGTTGGAAGAGGTCAAGAACAAGAATCTTGCTGTTTATAATAGACTTAGGGCCTTGTGCAGCAATTATATGAGGAAGTTCTTCGTGTTCTCAAATGAGTACCACAAGCAGGTCCTTCATTTGTCTTCGTTATGTTATTCAAGTTTTATTTTGCTTCAGACTGTGATAGGCCTCTGCTTTGCTTCAATTCAATTAAATTCCATGGCACTTTGGTGA
Network for GWHGAAZE015047
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
--
--
--
--
--
Protein Sequence
>GWHPAAZE015054 MLQSKSFVVRKTRQGKVVKAVREHYLRDDTYRRAWFCKVCDTKDSRLSSSALTVLVVDTNVVHNQIVLLENLANDEVVVLSVVLEEVKNKNLAVYNRLRALCSNYMRKFFVFSNEYHKQVLHLSSLCYSSFILLQTVIGLCFASIQLNSMALW
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12585
DIS3, RRP44
RNA degradation
map03018
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
10.796
SRR3591706
second leaf
5.713
SRR3591707
mature leaf
5.535
SRR3591708
Shoot apex
7.077
SRR3591709
Stem
9.795
SRR3591710
White floral bud
4.828
SRR3591711
White flower
6.229
SRR3591712
Green floral bud
6.513
SRR3591713
Yellow flower
6.077
SRP173429
SRR8316895
Juvenile bud stage
5.878
SRR8316896
Juvenile bud stage
8.988
SRR8316897
Juvenile bud stage
3.946
SRR8316894
Third green stage
4.066
SRR8316900
Third green stage
8.632
SRR8316901
Third green stage
6.035
SRR8316898
Complete white stage
0.935
SRR8316899
Complete white stage
6.109
SRR8316903
Complete white stage
2.693
SRR8316902
Silver flowering stage
2.324
SRR8316904
Silver flowering stage
3.591
SRR8316905
Silver flowering stage
1.528
SRR8316906
Gold flowering stage
4.420
SRR8316907
Gold flowering stage
2.650
SRR8316908
Gold flowering stage
4.943
SRP132670
SRR6706286
Control
2.461
SRR6706287
Light intensity 50%
3.014
SRR6706288
Light intensity 20%
4.209
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
2.562
CNS0095593
Slightly white alabastrum(diploid) 2
0.668
CNS0095594
Slightly white alabastrum(diploid) 3
1.451
CNS0095595
Whole white alabastrum(diploid) 2
1.781
CNS0095596
Whole white alabastrum(diploid) 3
3.742
CNS0095597
Whole white alabastrum(diploid) 4
1.556
CNS0095598
Silvery flower (diploied) 1
4.556
CNS0095599
Silvery flower (diploied) 2
1.414
CNS0095600
Silvery flower (diploied) 3
5.094
CNS0095601
Golden flower (diploid) 1
2.857
CNS0095602
Golden flower (diploid) 2
5.942
CNS0095603
Golden flower (diploid) 3
6.339
CNS0095604
Slightly white alabastrum(tetraploid) 1
5.066
CNS0095605
Slightly white alabastrum(tetraploid) 2
3.294
CNS0095606
Slightly white alabastrum(tetraploid) 3
8.010
CNS0095607
Whole white alabastrum(tetraploid) 1
2.958
CNS0095608
Whole white alabastrum(tetraploid) 2
3.274
CNS0095609
Whole white alabastrum(tetraploid) 3
7.471
CNS0095610
Silvery flower (diploied) 1
4.362
CNS0095611
Silvery flower (diploied) 2
6.012
CNS0095612
Silvery flower (diploied) 3
2.611
CNS0095613
Golden flower (tetraploid) 1
2.200
CNS0095614
Golden flower (tetraploid) 2
3.853
CNS0095615
Golden flower (tetraploid) 3
0.991
CRA001975
CRR073297
Stem 1
2.266
CRR073298
Stem 2
3.006
CRR073299
Stem 3
0.429
CRR073300
Leaf 1
2.759
CRR073301
Leaf 2
2.137
CRR073302
Leaf 3
1.426
CRR073303
Juvenile bud 1
1.269
CRR073304
Juvenile bud 2
1.317
CRR073305
Juvenile bud 3
1.328
CRR073306
Third green 1
0.338
CRR073307
Third green 2
0.130
CRR073308
Third green 3
0.141
CRR073309
Second white 1
0.252
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.277
CRR073312
Silver flowering 1
0.772
CRR073313
Silver flowering 2
0.009
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.537
CRR073316
Gold flowering 2
1.377
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.649
CRR073319
Tawny withering 2
0.442
CRR073320
Tawny withering 3
0.901