Detail information of GWHGAAZE015047


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHN25814.11.8133E-47Exosome complex exonuclease RRP44 [Glycine soja]
trEMBLtr|I1KB85|I1KB85_SOYBN8E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G14870.4}
TAIR10AT2G17510.16E-28ribonuclease II family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2383557123836819+
GWHAAZE00000004mRNA2383557123836819+
GWHAAZE00000004exon2383557123835798+
GWHAAZE00000004exon2383633323836470+
GWHAAZE00000004exon2383655323836819+
GWHAAZE00000004five_prime_UTR2383557123835741+
GWHAAZE00000004CDS2383574223835798+
GWHAAZE00000004CDS2383633323836470+
GWHAAZE00000004CDS2383655323836819+
Transcript Sequence

Network for GWHGAAZE015047

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12585DIS3, RRP44 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.796
SRR3591706second leaf5.713
SRR3591707mature leaf5.535
SRR3591708Shoot apex7.077
SRR3591709Stem9.795
SRR3591710White floral bud4.828
SRR3591711White flower6.229
SRR3591712Green floral bud6.513
SRR3591713Yellow flower6.077
SRP173429 SRR8316895Juvenile bud stage 5.878
SRR8316896Juvenile bud stage 8.988
SRR8316897Juvenile bud stage 3.946
SRR8316894Third green stage 4.066
SRR8316900Third green stage 8.632
SRR8316901Third green stage 6.035
SRR8316898Complete white stage 0.935
SRR8316899Complete white stage 6.109
SRR8316903Complete white stage 2.693
SRR8316902Silver flowering stage2.324
SRR8316904Silver flowering stage3.591
SRR8316905Silver flowering stage1.528
SRR8316906Gold flowering stage 4.420
SRR8316907Gold flowering stage 2.650
SRR8316908Gold flowering stage 4.943
SRP132670SRR6706286Control2.461
SRR6706287Light intensity 50%3.014
SRR6706288Light intensity 20%4.209
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.562
CNS0095593Slightly white alabastrum(diploid) 20.668
CNS0095594Slightly white alabastrum(diploid) 31.451
CNS0095595Whole white alabastrum(diploid) 21.781
CNS0095596Whole white alabastrum(diploid) 33.742
CNS0095597Whole white alabastrum(diploid) 41.556
CNS0095598Silvery flower (diploied) 14.556
CNS0095599Silvery flower (diploied) 21.414
CNS0095600Silvery flower (diploied) 35.094
CNS0095601Golden flower (diploid) 12.857
CNS0095602Golden flower (diploid) 25.942
CNS0095603Golden flower (diploid) 36.339
CNS0095604Slightly white alabastrum(tetraploid) 15.066
CNS0095605Slightly white alabastrum(tetraploid) 23.294
CNS0095606Slightly white alabastrum(tetraploid) 38.010
CNS0095607Whole white alabastrum(tetraploid) 12.958
CNS0095608Whole white alabastrum(tetraploid) 23.274
CNS0095609Whole white alabastrum(tetraploid) 37.471
CNS0095610Silvery flower (diploied) 14.362
CNS0095611Silvery flower (diploied) 26.012
CNS0095612Silvery flower (diploied) 32.611
CNS0095613Golden flower (tetraploid) 12.200
CNS0095614Golden flower (tetraploid) 23.853
CNS0095615Golden flower (tetraploid) 30.991
CRA001975CRR073297Stem 12.266
CRR073298Stem 23.006
CRR073299Stem 30.429
CRR073300Leaf 12.759
CRR073301Leaf 22.137
CRR073302Leaf 31.426
CRR073303Juvenile bud 11.269
CRR073304Juvenile bud 21.317
CRR073305Juvenile bud 31.328
CRR073306Third green 10.338
CRR073307Third green 20.130
CRR073308Third green 30.141
CRR073309Second white 10.252
CRR073310Second white 20.000
CRR073311Second white 30.277
CRR073312Silver flowering 10.772
CRR073313Silver flowering 20.009
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.537
CRR073316Gold flowering 21.377
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.649
CRR073319Tawny withering 20.442
CRR073320Tawny withering 30.901