Gene detail

Detail information of GWHGAAZE015080

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP01733.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FGV1\|ARFH_ARATH	Auxin response factor 8
trEMBL	tr\|A0A068U2C0\|A0A068U2C0_COFCA	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT5G37020.1	auxin response factor 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	24662757	24672077	-
GWHAAZE00000004	mRNA	24662757	24672077	-
GWHAAZE00000004	exon	24672053	24672077	-
GWHAAZE00000004	exon	24671429	24671541	-
GWHAAZE00000004	exon	24670978	24671034	-
GWHAAZE00000004	exon	24670553	24670708	-
GWHAAZE00000004	exon	24670390	24670474	-
GWHAAZE00000004	exon	24668108	24668198	-
GWHAAZE00000004	exon	24667623	24667745	-
GWHAAZE00000004	exon	24666851	24666926	-
GWHAAZE00000004	exon	24666192	24666339	-
GWHAAZE00000004	exon	24663973	24664931	-
GWHAAZE00000004	exon	24663674	24663864	-
GWHAAZE00000004	exon	24662757	24662943	-
GWHAAZE00000004	CDS	24672053	24672077	-
GWHAAZE00000004	CDS	24671429	24671541	-
GWHAAZE00000004	CDS	24670978	24671034	-
GWHAAZE00000004	CDS	24670553	24670708	-
GWHAAZE00000004	CDS	24670390	24670474	-
GWHAAZE00000004	CDS	24668108	24668198	-
GWHAAZE00000004	CDS	24667623	24667745	-
GWHAAZE00000004	CDS	24666851	24666926	-
GWHAAZE00000004	CDS	24666192	24666339	-
GWHAAZE00000004	CDS	24663973	24664931	-
GWHAAZE00000004	CDS	24663674	24663864	-
GWHAAZE00000004	CDS	24662757	24662943	-

Transcript Sequence
>GWHTAAZE015096 ATGAAGCTTTCAACATCCGGGCTTGGGGAGAAGAAATGTTTGAATTCAGAACTATGGCATGCGTGTGCCGGCCCTCTAGTGTCACTTCCGGCGGTGGGCAGTCGTGTGGTTTACTTCCCTCAGGGTCACAGTGAGCAGGCTGATGTTGAGTCGGACGAAGTGTATGCTCAAATGACATTGCAGCCATTGACGCCGCAAGAGCAAAAGGATACATATCTTCCCGTAGAGTTGGGGATTCCAAGCAGGCAACCGACCAATTATTTCTGCAAGACATTAACAGCGAGTGATACTAGTACTCACGGTGGATTCTCTGTTCCTCGCCGAGCTGCGGAAAAAGTTTTCCCCCCACTGGATTTCTCACAGCAGCCACCTGCTCAGGAACTTATTGCCAGAGATCTCCATGACGTTGAATGGAAGTTTAGGCATATTTTCCGGGGACAACCCAAACGACATTTGCTTACTACTGGTTGGAGTGTGTTTGTCAGTGCCAAGAGACTTGTTGCTGGAGATTCTGTTCTCTTCATCTGGGCTAGTCCATCTGAATTTGTCATACCTCTTTCGAAATATGTAAAAGCTGTATTTCACACGCGTGTATCTGTTGGAATGCGTTTTCGGATGCTTTTTGAAACTGAAGAATCAAGTGTCCGAAGATACATGGGTACGATAACTGGCATCGGTGACTTGGATCCTGTTCGCTGGCCAAATTCTCACTGGCGATCTGTTAAGGTTGGTTGGGACGAGTCAACTGCAGGTGAGAGGCAGCCACGAGTATCGTTATGGGAAATTGAGCCTTTGACAACCTTTCCCATGTATCCATCTCTCTTTCCCCTTAGGCTCAAACGGCCTTGGTATCCTGGTGCCTCATCTTTTCAAGATGAAGCAATTAACGGCATGAATTGGTTAAGAGGGGAAACTGGTGATCAAGGACTCCACTCCCTTAATTTTCAGTCCGTTGGTATGTTTCCGTGGATGCAGCAGCAGAGAGTCGATCCATCATACCTACGAAACGACCTCAATCAGCAGTACCAAGCCATGTTATCTGCTGGATTACATAATTTCGGGAGTGCAGATGCACTGAAACAACAACAATTGATGCAGTTTCAACAGCCTCCTGCCCAATATCTTCAACAATCAAGCAGCAGCCTTAATCATCCACTCATACAACAGCAGCAGCAGCAGCAAGTAATTCAGCACTCAATCCCACAGCATATCCTTCACGGGCAAACCCAAACACTACCAGAGAACCTGCCTAGGCCAGAGGAACATCAACCTCAAACGCAACGCACTTTCCCAGAGGCATATTTGCAGCAATCAAACATTCCTTCACCGTCATTTTCAAAAACGGAATTTGGAGATTCAAACAGTAAATTTTCACCATCAGTTGCTCATTCCAGTATGCAGAATATGATGGGTCCACTATGTACTGAAGGAGGTGGTAATCTTTTGAACTTCGCAAGAGCGGGTCAGTCAATGCTTGGTGAGCAGGCACCACCACCCCATCAGTCCTGGGCATCGAAGTTTCCGCATTCACATGGAGTCAATACTTCATCTGGTTCAGGGCCCCCCCTTGCTGTGGAGCAGGAAAATTGTAGCTTGGATACTCAGAATCAAGCTCTTTTTGGGGCTACTAATATCGACTCCTCTGGGCTCCGACTCCCCACTACTATTTCCAAAATTGGTACTTCTTCCATTGATGCCGATATATCCTCTGTGCCTTTAGGAGCTTCTGGGTTTCAGGGTTCTCTTTTTGGCTACATGCAAGACACTTCTGAGTTGTTGCATGGTGCAGGAGGACAAGTTGAACCATCAACCCCAACCTGTACATTTGTCAAGGTTTATAAATCAGGGTCGGTTGGTAGGTCGTTGGACATCTCCCGCTTCAACAGCTATAATGAGCTGAGAGAAGAGCTGGGTCAGATGTTCGGGATCGAAGGGTTTCTTGAAAACTCTCAAAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGAAATGCTTCTCCTTGGAGACGACCCATGGGATGCATTTGTAAATAACGTGTGGTATATCAAGATACTTTCACCTGAAGATGTACAGAAGCTGGGTATGCAAGAGGATGTTGAACCCTTCAGCGGAAATGCAGGTGAAAGGATGACCACTGGTAGTGGAGTTGGTGGTAGTCGAGACCTCCTTTCTGGGCTACCATCTCTAGGCTCACTCGAATACTGA

Network for GWHGAAZE015080

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	88	182	3.30E-19
PF06507.14	Auxin_resp	176	242	1.30E-24
PF02309.17	AUX_IAA	604	693	1.20E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	112.970
	SRR3591706	second leaf	57.455
	SRR3591707	mature leaf	31.302
	SRR3591708	Shoot apex	104.716
	SRR3591709	Stem	61.235
	SRR3591710	White floral bud	68.781
	SRR3591711	White flower	74.551
	SRR3591712	Green floral bud	108.619
	SRR3591713	Yellow flower	40.951
SRP173429	SRR8316895	Juvenile bud stage	69.362
	SRR8316896	Juvenile bud stage	79.711
	SRR8316897	Juvenile bud stage	43.477
	SRR8316894	Third green stage	36.963
	SRR8316900	Third green stage	106.095
	SRR8316901	Third green stage	98.235
	SRR8316898	Complete white stage	28.744
	SRR8316899	Complete white stage	139.818
	SRR8316903	Complete white stage	49.885
	SRR8316902	Silver flowering stage	23.060
	SRR8316904	Silver flowering stage	33.744
	SRR8316905	Silver flowering stage	17.631
	SRR8316906	Gold flowering stage	43.592
	SRR8316907	Gold flowering stage	41.629
	SRR8316908	Gold flowering stage	46.542
SRP132670	SRR6706286	Control	131.448
	SRR6706287	Light intensity 50%	129.304
	SRR6706288	Light intensity 20%	134.049
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	54.233
	CNS0095593	Slightly white alabastrum(diploid) 2	60.052
	CNS0095594	Slightly white alabastrum(diploid) 3	37.325
	CNS0095595	Whole white alabastrum(diploid) 2	47.526
	CNS0095596	Whole white alabastrum(diploid) 3	31.016
	CNS0095597	Whole white alabastrum(diploid) 4	37.000
	CNS0095598	Silvery flower (diploied) 1	78.858
	CNS0095599	Silvery flower (diploied) 2	68.189
	CNS0095600	Silvery flower (diploied) 3	65.661
	CNS0095601	Golden flower (diploid) 1	67.809
	CNS0095602	Golden flower (diploid) 2	67.288
	CNS0095603	Golden flower (diploid) 3	63.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.809
	CNS0095605	Slightly white alabastrum(tetraploid) 2	47.467
	CNS0095606	Slightly white alabastrum(tetraploid) 3	168.311
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.594
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.028
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.497
	CNS0095610	Silvery flower (diploied) 1	52.374
	CNS0095611	Silvery flower (diploied) 2	68.148
	CNS0095612	Silvery flower (diploied) 3	51.249
	CNS0095613	Golden flower (tetraploid) 1	24.671
	CNS0095614	Golden flower (tetraploid) 2	41.151
	CNS0095615	Golden flower (tetraploid) 3	49.277
CRA001975	CRR073297	Stem 1	149.681
	CRR073298	Stem 2	136.721
	CRR073299	Stem 3	125.392
	CRR073300	Leaf 1	164.978
	CRR073301	Leaf 2	150.356
	CRR073302	Leaf 3	116.714
	CRR073303	Juvenile bud 1	110.405
	CRR073304	Juvenile bud 2	60.417
	CRR073305	Juvenile bud 3	153.767
	CRR073306	Third green 1	19.347
	CRR073307	Third green 2	18.029
	CRR073308	Third green 3	25.228
	CRR073309	Second white 1	26.456
	CRR073310	Second white 2	21.852
	CRR073311	Second white 3	19.346
	CRR073312	Silver flowering 1	9.982
	CRR073313	Silver flowering 2	12.153
	CRR073314	Silver flowering 3	13.673
	CRR073315	Gold flowering 1	18.220
	CRR073316	Gold flowering 2	30.537
	CRR073317	Gold flowering 3	6.391
	CRR073318	Tawny withering 1	35.819
	CRR073319	Tawny withering 2	35.257
	CRR073320	Tawny withering 3	37.002