Gene detail

Detail information of GWHGAAZE015116

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002305928.1	isocitrate dehydrogenase family protein [Populus trichocarpa]
Swissprot	tr\|P50218\|IDHC_TOBAC	Isocitrate dehydrogenase [NADP]
trEMBL	tr\|B9H3K3\|B9H3K3_POPTR	Isocitrate dehydrogenase [NADP] {ECO:0000256\|PIRNR:PIRNR000108}
TAIR10	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	25393172	25400051	+
GWHAAZE00000004	mRNA	25393172	25400051	+
GWHAAZE00000004	exon	25393172	25393207	+
GWHAAZE00000004	exon	25393301	25393410	+
GWHAAZE00000004	exon	25393967	25394004	+
GWHAAZE00000004	exon	25394115	25394192	+
GWHAAZE00000004	exon	25394587	25394640	+
GWHAAZE00000004	exon	25394761	25394862	+
GWHAAZE00000004	exon	25395276	25395367	+
GWHAAZE00000004	exon	25395470	25395573	+
GWHAAZE00000004	exon	25397458	25397526	+
GWHAAZE00000004	exon	25397628	25397743	+
GWHAAZE00000004	exon	25397991	25398025	+
GWHAAZE00000004	exon	25398302	25398444	+
GWHAAZE00000004	exon	25399773	25399895	+
GWHAAZE00000004	exon	25399970	25400051	+
GWHAAZE00000004	CDS	25393172	25393207	+
GWHAAZE00000004	CDS	25393301	25393410	+
GWHAAZE00000004	CDS	25393967	25394004	+
GWHAAZE00000004	CDS	25394115	25394192	+
GWHAAZE00000004	CDS	25394587	25394640	+
GWHAAZE00000004	CDS	25394761	25394862	+
GWHAAZE00000004	CDS	25395276	25395367	+
GWHAAZE00000004	CDS	25395470	25395573	+
GWHAAZE00000004	CDS	25397458	25397526	+
GWHAAZE00000004	CDS	25397628	25397743	+
GWHAAZE00000004	CDS	25397991	25398025	+
GWHAAZE00000004	CDS	25398302	25398444	+
GWHAAZE00000004	CDS	25399773	25399895	+
GWHAAZE00000004	CDS	25399970	25400051	+

Transcript Sequence
>GWHTAAZE015132 ATGACCCGAGTCTTCTGGAAATCAATAAAGGATAAGCTCATTTTTCCATTTGTGGAATTGGATATAAAATACTTTGACCTTGGCCTTCCTCATCGTGATGCCACCGATGACAAAGTTACTGTTGAAAGTGCTGAAGCTACCCTTAAGTACAATGTAGCAATTAAGTGTGCAACCATTACTCCAGATGAAGGTCGTATGAAGGAGTTTAACCTGAAGCAAATGTGGAAGAGTCCTAATGGGACAATCAGGAACATTTTGAATGGCACGGTATTCAGAGAACCAATTATTTGCAAAAACATCCCCAAGCTCATTCCAGGATGGACAAAGCCAATATGCATTGGAAGGCATGCTTTTGGTGATCAATACCGAGCAACTGATGCAGTTATCAAAGGACCGGGGAAGCTCAAGTTGGTATTCGTGCCTGAAGGGCAGGATGAAAAGACAGAGTTGGAGGTTTACAACTTCACTGGTGCAGGAGGAGTTGCTTTATCTATGTACAACACTGACGAGTCCATTAAAGCTTTTGCTGAGGCTTCCATGAACACAGCTTACGAGAAAAAGTGGCCTCTCTATCTTAGCACGAAAAATACTATTCTTAAAAAATATGATGGGAGATTCAAGGACATATTTCAAGAAGTTTATGAAAGCAATTGGAAATCTAAGTATGAGGCTGCTGGGATATGGTACGAACACCGTCTCATTGACGATATGGTTGCTTATGCTCTGAAGAGTGAAGGAGGTTATGTATGGGCATGCAAAAACTATGATGGTGATGTGCAGAGTGATATGTTAGCACAAGGGTTTGGATCTCTTGGGCTGATGACATCTGTTCTGGTGTGTCCGGATGGAAAGACCATAGAAGCTGAAGCAGCCCATGGCACTGTGACACGCCACTATAGGGTTCATCAAAAAGGAGGGGAAACCAGCACAAACAGCGTAGCCTCTATTTTTGCTTGGTCTCGAGGGCTCGCACACAGGGCAAAACTTGATGGCAATGCAAAGCTGTTGGATTTCACTGAGAAACTAGAAGCAGCTTGTATTGGCACGGTGGAGTCTGGAAAGATGACAAAGGATCTTGCTCTTATCATCCACGGATCCAAAATGAGTAGGGAACACTATCTCAATACCGAAGAATTCATCGATGCTGTGGCTGATGATCTCAAATCAAGACTTTCTTGCTAA

Network for GWHGAAZE015116

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0219	map01200 Carbon metabolism map04146 Peroxisome map01210 2-Oxocarboxylic acid metabolism map04146 Peroxisome GO:0006102 isocitrate metabolic process GOslim:biological_process GO:0006635 fatty acid beta-oxidation GOslim:biological_process GO:0051499 D-aminoacyl-tRNA deacylase activity GOslim:molecular_function GO:0003997 acyl-CoA oxidase activity GOslim:molecular_function GO:0004450 isocitrate dehydrogenase (NADP+) activity GOslim:molecular_function GO:0006631 fatty acid metabolic process GOslim:biological_process map01230 Biosynthesis of amino acids map01110 Biosynthesis of secondary metabolites GO:0006520 cellular amino acid metabolic process GOslim:biological_process map04975 Fat digestion and absorption map01120 Microbial metabolism in diverse environments GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GOslim:molecular_function GO:0008483 transaminase activity GOslim:molecular_function GO:0009058 biosynthetic process GOslim:biological_process GO:0055114 oxidation-reduction process GOslim:biological_process map00720 Carbon fixation pathways in prokaryotes map00220 Arginine biosynthesis map00950 Isoquinoline alkaloid biosynthesis map00960 Tropane, piperidine and pyridine alkaloid biosynthesis map01040 Biosynthesis of unsaturated fatty acids map01100 Metabolic pathways map03320 PPAR signaling pathway map00360 Phenylalanine metabolism map00330 Arginine and proline metabolism map00640 Propanoate metabolism map00020 Citrate cycle map00350 Tyrosine metabolism map00710 Carbon fixation in photosynthetic organisms map04024 cAMP signaling pathway map00250 Alanine, aspartate and glutamate metabolism map00400 Phenylalanine, tyrosine and tryptophan biosynthesis map00071 Fatty acid degradation map01212 Fatty acid metabolism map00410 beta-Alanine metabolism GO:0051287 NAD binding GOslim:molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GOslim:molecular_function map00592 alpha-Linolenic acid metabolism

Module ID

Function Annotation

CFinderModule0219

map01200 Carbon metabolism
map04146 Peroxisome
map01210 2-Oxocarboxylic acid metabolism
map04146 Peroxisome
GO:0006102 isocitrate metabolic process GOslim:biological_process
GO:0006635 fatty acid beta-oxidation GOslim:biological_process
GO:0051499 D-aminoacyl-tRNA deacylase activity GOslim:molecular_function
GO:0003997 acyl-CoA oxidase activity GOslim:molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity GOslim:molecular_function
GO:0006631 fatty acid metabolic process GOslim:biological_process
map01230 Biosynthesis of amino acids
map01110 Biosynthesis of secondary metabolites
GO:0006520 cellular amino acid metabolic process GOslim:biological_process
map04975 Fat digestion and absorption
map01120 Microbial metabolism in diverse environments
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors GOslim:molecular_function
GO:0008483 transaminase activity GOslim:molecular_function
GO:0009058 biosynthetic process GOslim:biological_process
GO:0055114 oxidation-reduction process GOslim:biological_process
map00720 Carbon fixation pathways in prokaryotes
map00220 Arginine biosynthesis
map00950 Isoquinoline alkaloid biosynthesis
map00960 Tropane, piperidine and pyridine alkaloid biosynthesis
map01040 Biosynthesis of unsaturated fatty acids
map01100 Metabolic pathways
map03320 PPAR signaling pathway
map00360 Phenylalanine metabolism
map00330 Arginine and proline metabolism
map00640 Propanoate metabolism
map00020 Citrate cycle
map00350 Tyrosine metabolism
map00710 Carbon fixation in photosynthetic organisms
map04024 cAMP signaling pathway
map00250 Alanine, aspartate and glutamate metabolism
map00400 Phenylalanine, tyrosine and tryptophan biosynthesis
map00071 Fatty acid degradation
map01212 Fatty acid metabolism
map00410 beta-Alanine metabolism
GO:0051287 NAD binding GOslim:molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GOslim:molecular_function
map00592 alpha-Linolenic acid metabolism

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00180.21	Iso_dh	1	383	2.10E-87

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00031	IDH1, IDH2, icd	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020
		Carbon fixation pathways in prokaryotes	map00720
		Glutathione metabolism	map00480
		Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0006102	biological_process	isocitrate metabolic process
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0004450	molecular_function	isocitrate dehydrogenase (NADP+) activity
GO:0000287	molecular_function	magnesium ion binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	317.939
	SRR3591706	second leaf	48.800
	SRR3591707	mature leaf	61.961
	SRR3591708	Shoot apex	118.916
	SRR3591709	Stem	283.041
	SRR3591710	White floral bud	209.143
	SRR3591711	White flower	244.394
	SRR3591712	Green floral bud	193.956
	SRR3591713	Yellow flower	353.296
SRP173429	SRR8316895	Juvenile bud stage	102.935
	SRR8316896	Juvenile bud stage	176.288
	SRR8316897	Juvenile bud stage	74.937
	SRR8316894	Third green stage	82.119
	SRR8316900	Third green stage	257.972
	SRR8316901	Third green stage	229.324
	SRR8316898	Complete white stage	128.387
	SRR8316899	Complete white stage	313.279
	SRR8316903	Complete white stage	173.320
	SRR8316902	Silver flowering stage	165.780
	SRR8316904	Silver flowering stage	185.449
	SRR8316905	Silver flowering stage	85.397
	SRR8316906	Gold flowering stage	431.942
	SRR8316907	Gold flowering stage	344.737
	SRR8316908	Gold flowering stage	379.550
SRP132670	SRR6706286	Control	215.905
	SRR6706287	Light intensity 50%	221.397
	SRR6706288	Light intensity 20%	225.226
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	117.604
	CNS0095593	Slightly white alabastrum(diploid) 2	122.072
	CNS0095594	Slightly white alabastrum(diploid) 3	102.163
	CNS0095595	Whole white alabastrum(diploid) 2	102.477
	CNS0095596	Whole white alabastrum(diploid) 3	116.169
	CNS0095597	Whole white alabastrum(diploid) 4	104.014
	CNS0095598	Silvery flower (diploied) 1	98.074
	CNS0095599	Silvery flower (diploied) 2	110.810
	CNS0095600	Silvery flower (diploied) 3	357.507
	CNS0095601	Golden flower (diploid) 1	128.667
	CNS0095602	Golden flower (diploid) 2	334.382
	CNS0095603	Golden flower (diploid) 3	326.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	144.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	110.673
	CNS0095606	Slightly white alabastrum(tetraploid) 3	215.964
	CNS0095607	Whole white alabastrum(tetraploid) 1	97.524
	CNS0095608	Whole white alabastrum(tetraploid) 2	79.941
	CNS0095609	Whole white alabastrum(tetraploid) 3	209.879
	CNS0095610	Silvery flower (diploied) 1	485.718
	CNS0095611	Silvery flower (diploied) 2	383.603
	CNS0095612	Silvery flower (diploied) 3	289.554
	CNS0095613	Golden flower (tetraploid) 1	365.262
	CNS0095614	Golden flower (tetraploid) 2	385.075
	CNS0095615	Golden flower (tetraploid) 3	276.748
CRA001975	CRR073297	Stem 1	153.556
	CRR073298	Stem 2	152.023
	CRR073299	Stem 3	150.427
	CRR073300	Leaf 1	218.899
	CRR073301	Leaf 2	200.659
	CRR073302	Leaf 3	239.116
	CRR073303	Juvenile bud 1	251.355
	CRR073304	Juvenile bud 2	172.631
	CRR073305	Juvenile bud 3	232.986
	CRR073306	Third green 1	121.031
	CRR073307	Third green 2	137.953
	CRR073308	Third green 3	115.885
	CRR073309	Second white 1	223.844
	CRR073310	Second white 2	214.343
	CRR073311	Second white 3	275.042
	CRR073312	Silver flowering 1	515.156
	CRR073313	Silver flowering 2	574.255
	CRR073314	Silver flowering 3	542.128
	CRR073315	Gold flowering 1	54.259
	CRR073316	Gold flowering 2	69.753
	CRR073317	Gold flowering 3	63.674
	CRR073318	Tawny withering 1	213.748
	CRR073319	Tawny withering 2	163.823
	CRR073320	Tawny withering 3	176.495