Gene detail

Detail information of GWHGAAZE015168

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP29794.1	hypothetical protein JCGZ_18729 [Jatropha curcas]
Swissprot	tr\|Q6YU51\|DXS2_ORYSJ	Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBL	tr\|A0A067KD90\|A0A067KD90_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP29794.1}
TAIR10	AT4G15560.1	Deoxyxylulose-5-phosphate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	26783971	26789317	+
GWHAAZE00000004	mRNA	26783971	26789317	+
GWHAAZE00000004	exon	26783971	26784087	+
GWHAAZE00000004	exon	26785135	26785299	+
GWHAAZE00000004	exon	26785443	26785593	+
GWHAAZE00000004	exon	26785935	26786206	+
GWHAAZE00000004	exon	26786830	26787001	+
GWHAAZE00000004	exon	26787333	26787640	+
GWHAAZE00000004	exon	26788225	26788506	+
GWHAAZE00000004	exon	26788611	26788895	+
GWHAAZE00000004	exon	26789171	26789317	+
GWHAAZE00000004	CDS	26783971	26784087	+
GWHAAZE00000004	CDS	26785135	26785299	+
GWHAAZE00000004	CDS	26785443	26785593	+
GWHAAZE00000004	CDS	26785935	26786206	+
GWHAAZE00000004	CDS	26786830	26787001	+
GWHAAZE00000004	CDS	26787333	26787640	+
GWHAAZE00000004	CDS	26788225	26788506	+
GWHAAZE00000004	CDS	26788611	26788895	+
GWHAAZE00000004	CDS	26789171	26789317	+

Transcript Sequence
>GWHTAAZE015184 ATGATGATAAGGAAAGAAAAAGAAGGACGGAAGATAGATTTCTCTGGAGAAAAGCCACCAACTCCCTTACTTGATACTATTAATTACCCTGTCCATATGAAAAATCTCTCCACAGAGGATCTTGAACAATTAGCAGCAGAGCTTAGAGCAGATATAGTATACACAGTGGCAAATATAGGTGGACATCTAAGTGCAAGCTTAGGAGTGGTGGAATTAGCTGTGGCCCTTCACCATGTTTTCAATACCCCTGATGATAGAATCATATGGGATGTTGGCCATCAGGCCTACCCACATAAAATTCTAACAGGGAGGAGGTCTAAAATGCACACAATAAGAAAAACATCAGGGCTAGCTGGATTTCCTAAAAGGGATGAGAGTATTTATGATGCTTTTGGTGCTGGCCATAGCTCTACTAGCATATCTGCTGGTCTTGGTATGGCTGTGGGGAGAGATTTATTAGGGAAGAAGAACAATGTAATATCAGTGATTGGAGATGGAGCTATGACTGCTGGACAAGCATATGAGGCCATGAATAATGCTGGCTTTCTTGATTCTAACCTCATTGTTGTACTTAATGACAACAAGCAAGTCTCCTTGCCCACTGCCACTCTTGATGGCCCTGCTACCCCTGTTGGTGCCCTTAGCAGTACCCTATCCAAGCTCCAAGCCAGCCCCAAGTTCCGAAAGCTTCGTGAGGCTGCAAAAGAGCTCGGATTGTACTACATAGGTCCAGTAGATGGGCACAATGTCGAAGATTTGGTCACCATTTTCGAGAAAGTTAAGTCTATGCCGGCACCAGGGCCAGTTTTGATCCACATTGTGACTGAGAAAGGCAAAGGCTATCCCCCGGCAGAGGCAGCAGCTGATAAAATGCACGGGGTTGTGAAGTTTGATGTGAAGACAGGGAAGCAATATAAGCCTAAGGCTGCTACACTTTCATATACTCAATATTTTGCCGAAGGGCTGATACAAGAAGCTGAGGAAGATAACAAGATTGTAGCAATCCATGCAGCCATGGGTGGTGGGACCGGCCTCAATTATTTCCAAAAGAGGTTCCCAGATCGATGTTTCGACGTGGGCATTGCTGAGCAACACGCTGTTACTTTCGCTGCTGGCTTAGCCACAGAGGGTCTCAAGCCATTTTGTGCTATCTATTCCTCTTTCCTACAAAGAGGCTATGACCAGGTGGTGCATGATGTGGATCTTCAAAAGCTACCTGTCCGATTCGCAATGGATCGAGCTGGTCTAGTCGGGGCAGACGGACCGACCCATTGTGGGGCATTTGACATTGCGTACATGGCTTGCTTGCCCAACATGGTGGTAATGGCTCCATCAGATGAAGCTGAGCTTATGCACATAGTCGCCACGGCTGCAGCCATTGATGATAGACCGAGTTGCTTTAGGTTCCCGAGGGGTAATGGAATAGGAGCCATTCTTCCACCTAATAACAAAGGAGTACCAATTGAGGTTGGAAAGGGAAGAATACTAATGGAAGGCAATAGAGTGGCAATACTGGGGTATGGTTCGATAGTACAACAATGTGTAGAGGCTGCAGGCTTTCTCAAATCCCACAACATATTTACGACTGTAGCCGATGCTCGCTTCTGCAAGCCATTGGATGCTGATTTGATCAAACGGTTGGCAAAGGAGCACGAGATCTTGATCACAGTAGAGGAAGGCTCGGTCGGAGGGTTTGGGTCCCATGTAGCCCATTTCCTAACATTAAATGGCATTCTTGATGGAAAGCTAAAGTTGAGAGCAATGGTACTTCCGGATAGATACATCGACCATGGAGCGCCCCAAGATCAGATGGAAGAGGCTGGTCTTTCTTCTAGGCATATATGCGCGACGGTTTTGTCGCTATTGGGTAGGCCTAAAGAAGCTCTTCAAGTTCAGTGA

Network for GWHGAAZE015168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13292.7	DXP_synthase_N	24	236	2.40E-86
PF02779.25	Transket_pyr	312	473	3.10E-42
PF02780.21	Transketolase_C	491	614	4.90E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01662	dxs	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Thiamine metabolism	map00730
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0016114	biological_process	terpenoid biosynthetic process
GO:0008661	molecular_function	1-deoxy-D-xylulose-5-phosphate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.189
	SRR3591706	second leaf	30.506
	SRR3591707	mature leaf	4.474
	SRR3591708	Shoot apex	11.042
	SRR3591709	Stem	1.049
	SRR3591710	White floral bud	334.285
	SRR3591711	White flower	547.242
	SRR3591712	Green floral bud	17.294
	SRR3591713	Yellow flower	312.982
SRP173429	SRR8316895	Juvenile bud stage	6.592
	SRR8316896	Juvenile bud stage	7.040
	SRR8316897	Juvenile bud stage	4.615
	SRR8316894	Third green stage	4.614
	SRR8316900	Third green stage	26.939
	SRR8316901	Third green stage	30.691
	SRR8316898	Complete white stage	206.137
	SRR8316899	Complete white stage	65.525
	SRR8316903	Complete white stage	276.793
	SRR8316902	Silver flowering stage	489.328
	SRR8316904	Silver flowering stage	634.980
	SRR8316905	Silver flowering stage	353.117
	SRR8316906	Gold flowering stage	1466.342
	SRR8316907	Gold flowering stage	1275.361
	SRR8316908	Gold flowering stage	1454.044
SRP132670	SRR6706286	Control	34.698
	SRR6706287	Light intensity 50%	44.419
	SRR6706288	Light intensity 20%	40.538
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.982
	CNS0095593	Slightly white alabastrum(diploid) 2	8.331
	CNS0095594	Slightly white alabastrum(diploid) 3	7.405
	CNS0095595	Whole white alabastrum(diploid) 2	13.540
	CNS0095596	Whole white alabastrum(diploid) 3	7.338
	CNS0095597	Whole white alabastrum(diploid) 4	14.456
	CNS0095598	Silvery flower (diploied) 1	61.464
	CNS0095599	Silvery flower (diploied) 2	73.716
	CNS0095600	Silvery flower (diploied) 3	438.889
	CNS0095601	Golden flower (diploid) 1	96.129
	CNS0095602	Golden flower (diploid) 2	266.335
	CNS0095603	Golden flower (diploid) 3	265.918
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.002
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.167
	CNS0095606	Slightly white alabastrum(tetraploid) 3	89.922
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.860
	CNS0095609	Whole white alabastrum(tetraploid) 3	74.399
	CNS0095610	Silvery flower (diploied) 1	435.340
	CNS0095611	Silvery flower (diploied) 2	452.261
	CNS0095612	Silvery flower (diploied) 3	2487.283
	CNS0095613	Golden flower (tetraploid) 1	609.218
	CNS0095614	Golden flower (tetraploid) 2	393.610
	CNS0095615	Golden flower (tetraploid) 3	796.952
CRA001975	CRR073297	Stem 1	13.135
	CRR073298	Stem 2	14.477
	CRR073299	Stem 3	10.120
	CRR073300	Leaf 1	43.191
	CRR073301	Leaf 2	33.039
	CRR073302	Leaf 3	26.040
	CRR073303	Juvenile bud 1	39.124
	CRR073304	Juvenile bud 2	63.251
	CRR073305	Juvenile bud 3	50.605
	CRR073306	Third green 1	1049.505
	CRR073307	Third green 2	572.977
	CRR073308	Third green 3	747.913
	CRR073309	Second white 1	1047.341
	CRR073310	Second white 2	1301.670
	CRR073311	Second white 3	1440.470
	CRR073312	Silver flowering 1	1158.788
	CRR073313	Silver flowering 2	1000.291
	CRR073314	Silver flowering 3	903.105
	CRR073315	Gold flowering 1	1.655
	CRR073316	Gold flowering 2	1.676
	CRR073317	Gold flowering 3	1.817
	CRR073318	Tawny withering 1	4.251
	CRR073319	Tawny withering 2	6.221
	CRR073320	Tawny withering 3	6.476