Detail information of GWHGAAZE015172


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006380580.13.27227E-49hypothetical protein POPTR_0007s09490g [Populus trichocarpa]
Swissprottr|Q6YU51|DXS2_ORYSJ7E-50Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic (Precursor)
trEMBLtr|U5GA89|U5GA89_POPTR1E-49Uncharacterized protein {ECO:0000313|EMBL:ERP58377.1}
TAIR10AT3G21500.18E-401-deoxy-D-xylulose 5-phosphate synthase 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene2693368326933964+
GWHAAZE00000004mRNA2693368326933964+
GWHAAZE00000004exon2693368326933964+
GWHAAZE00000004CDS2693368326933964+
Transcript Sequence

Network for GWHGAAZE015172

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.25Transket_pyr3803.00E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01662dxs Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Thiamine metabolismmap00730
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.244
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.286
SRP173429 SRR8316895Juvenile bud stage 0.000
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.000
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.027
SRR8316898Complete white stage 0.034
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.169
SRR8316902Silver flowering stage0.113
SRR8316904Silver flowering stage1.780
SRR8316905Silver flowering stage0.088
SRR8316906Gold flowering stage 0.705
SRR8316907Gold flowering stage 0.337
SRR8316908Gold flowering stage 0.735
SRP132670SRR6706286Control0.000
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.000
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.000
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.000
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 31.521
CNS0095601Golden flower (diploid) 10.197
CNS0095602Golden flower (diploid) 20.037
CNS0095603Golden flower (diploid) 30.091
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.308
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 13.528
CNS0095608Whole white alabastrum(tetraploid) 22.144
CNS0095609Whole white alabastrum(tetraploid) 30.845
CNS0095610Silvery flower (diploied) 10.460
CNS0095611Silvery flower (diploied) 20.425
CNS0095612Silvery flower (diploied) 31.959
CNS0095613Golden flower (tetraploid) 10.819
CNS0095614Golden flower (tetraploid) 20.252
CNS0095615Golden flower (tetraploid) 30.770
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.000
CRR073299Stem 30.000
CRR073300Leaf 10.000
CRR073301Leaf 20.021
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.034
CRR073306Third green 13.193
CRR073307Third green 20.468
CRR073308Third green 34.257
CRR073309Second white 15.130
CRR073310Second white 25.496
CRR073311Second white 31.650
CRR073312Silver flowering 14.492
CRR073313Silver flowering 21.529
CRR073314Silver flowering 31.414
CRR073315Gold flowering 10.091
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.000
CRR073320Tawny withering 30.000