Gene detail

Detail information of GWHGAAZE015322

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008337635.1	2.5499E-131	PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Malus domestica]
Swissprot	tr\|Q9C5D7\|CAMT3_ARATH	2E-117	Probable caffeoyl-CoA O-methyltransferase At4g26220
trEMBL	tr\|B9N5I7\|B9N5I7_POPTR	1E-127	Uncharacterized protein {ECO:0000313\|EMBL:ERP49748.1}
TAIR10	AT4G26220.1	2E-93	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	31513785	31517594	+
GWHAAZE00000004	mRNA	31513785	31517594	+
GWHAAZE00000004	exon	31513785	31513844	+
GWHAAZE00000004	exon	31513961	31514040	+
GWHAAZE00000004	exon	31514810	31514954	+
GWHAAZE00000004	exon	31516018	31516149	+
GWHAAZE00000004	exon	31517304	31517594	+
GWHAAZE00000004	CDS	31513785	31513844	+
GWHAAZE00000004	CDS	31513961	31514040	+
GWHAAZE00000004	CDS	31514810	31514954	+
GWHAAZE00000004	CDS	31516018	31516149	+
GWHAAZE00000004	CDS	31517304	31517594	+

Transcript Sequence
>GWHTAAZE015338 ATGGAGAATGAAATAAAAAAGAAAGCACAAGGAATACTACAGAGCGGAGAGTTGTATCAGTATATATTGGAGACTAGTGTGTATCCACGTGAACCAGAACCTCTCAAGGAGCTAAGGGCTGCCGCTGCAAACCATCCTCTGGCTTTTATGGGTACAGCACCAGATGCAGGGCAGATGATGGCCATGCTATTGAAGCTAATTAATGCCAAAAAGACTATTGAAATTGGAGTTTTTACTGGTTATTCCTTGCTCCTCACTGCCCTTACTATTCCTGATGATGGCAAGATTACAGCAGTAGATGTGAATAGAGAGTCATACGAGATAGGGTTGCCGTTTATCAAAAAGGCCGGTGTGGAACATAAAATCGACTTTTGTCACTCTGAGGCTTTACCAGTTCTTGACAAGCTCTTGGAAGATCATGAGAATGAGGGAAGTTTTGACTTTGCTTTCGTCGATGCTGACAAGAATAGTTACTTGAAGTATCATGAGAGATTGATGAAATTATTGAAGGTTGGAGGGATAATTGTGTATGATAACACGCTTTGGGGAGGAACGGTGGCAATGGCGGAGGAGATGGTAATAGAGCAGAGGATAGAGGGCAGGCATTACACCATAGAGTTCAACAAGTTGCTAGCAGCCGATCCTCGCATTCAAATTTCTCATGCTGCAGTGGGAGATGGAATCATTATCTGTAGGCGTATCTACTGA

Network for GWHGAAZE015322

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01596.18	Methyltransf_3	24	234	1.40E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00588	E2.1.1.104	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.821
	SRR3591706	second leaf	53.635
	SRR3591707	mature leaf	12.297
	SRR3591708	Shoot apex	192.444
	SRR3591709	Stem	0.882
	SRR3591710	White floral bud	8.539
	SRR3591711	White flower	1.830
	SRR3591712	Green floral bud	12.933
	SRR3591713	Yellow flower	1.402
SRP173429	SRR8316895	Juvenile bud stage	23.792
	SRR8316896	Juvenile bud stage	30.585
	SRR8316897	Juvenile bud stage	7.449
	SRR8316894	Third green stage	16.321
	SRR8316900	Third green stage	60.225
	SRR8316901	Third green stage	52.645
	SRR8316898	Complete white stage	5.329
	SRR8316899	Complete white stage	25.595
	SRR8316903	Complete white stage	7.541
	SRR8316902	Silver flowering stage	21.609
	SRR8316904	Silver flowering stage	15.253
	SRR8316905	Silver flowering stage	11.050
	SRR8316906	Gold flowering stage	35.145
	SRR8316907	Gold flowering stage	40.421
	SRR8316908	Gold flowering stage	25.009
SRP132670	SRR6706286	Control	42.083
	SRR6706287	Light intensity 50%	49.572
	SRR6706288	Light intensity 20%	64.333
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.913
	CNS0095593	Slightly white alabastrum(diploid) 2	9.873
	CNS0095594	Slightly white alabastrum(diploid) 3	12.324
	CNS0095595	Whole white alabastrum(diploid) 2	15.234
	CNS0095596	Whole white alabastrum(diploid) 3	15.353
	CNS0095597	Whole white alabastrum(diploid) 4	8.507
	CNS0095598	Silvery flower (diploied) 1	0.542
	CNS0095599	Silvery flower (diploied) 2	0.474
	CNS0095600	Silvery flower (diploied) 3	4.594
	CNS0095601	Golden flower (diploid) 1	1.683
	CNS0095602	Golden flower (diploid) 2	1.833
	CNS0095603	Golden flower (diploid) 3	1.559
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.850
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.570
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.009
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.505
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.719
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.599
	CNS0095610	Silvery flower (diploied) 1	3.449
	CNS0095611	Silvery flower (diploied) 2	6.045
	CNS0095612	Silvery flower (diploied) 3	5.201
	CNS0095613	Golden flower (tetraploid) 1	0.831
	CNS0095614	Golden flower (tetraploid) 2	2.445
	CNS0095615	Golden flower (tetraploid) 3	0.088
CRA001975	CRR073297	Stem 1	19.241
	CRR073298	Stem 2	20.301
	CRR073299	Stem 3	15.807
	CRR073300	Leaf 1	16.879
	CRR073301	Leaf 2	17.393
	CRR073302	Leaf 3	22.557
	CRR073303	Juvenile bud 1	19.365
	CRR073304	Juvenile bud 2	50.764
	CRR073305	Juvenile bud 3	6.424
	CRR073306	Third green 1	18.876
	CRR073307	Third green 2	7.000
	CRR073308	Third green 3	12.080
	CRR073309	Second white 1	6.462
	CRR073310	Second white 2	2.738
	CRR073311	Second white 3	4.800
	CRR073312	Silver flowering 1	0.697
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.891
	CRR073315	Gold flowering 1	3.764
	CRR073316	Gold flowering 2	6.993
	CRR073317	Gold flowering 3	1.235
	CRR073318	Tawny withering 1	0.255
	CRR073319	Tawny withering 2	0.168
	CRR073320	Tawny withering 3	0.000