Detail information of GWHGAAZE015398


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP03252.15.49305E-22unnamed protein product [Coffea canephora]
Swissprottr|Q9SEK3|HXK1_SPIOL4E-16Hexokinase-1
trEMBLtr|A0A068U4P4|A0A068U4P4_COFCA2E-22Coffea canephora DH200=94 genomic scaffold, scaffold_9 {ECO:0000313|EMBL:CDP03252.1}
TAIR10AT2G19860.10.00000001hexokinase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene3765050237651418+
GWHAAZE00000004mRNA3765050237651418+
GWHAAZE00000004exon3765050237650591+
GWHAAZE00000004exon3765128737651418+
GWHAAZE00000004CDS3765050237650591+
GWHAAZE00000004CDS3765128737651418+
Transcript Sequence

Network for GWHGAAZE015398

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03727.17Hexokinase_225621.20E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00844HK Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Fructose and mannose metabolismmap00051
Galactose metabolismmap00052
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Streptomycin biosynthesismap00521
Neomycin, kanamycin and gentamicin biosynthesismap00524
HIF-1 signaling pathwaymap04066
Insulin signaling pathwaymap04910
Carbohydrate digestion and absorptionmap04973

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0005524molecular_functionATP binding
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.952
SRR3591706second leaf0.272
SRR3591707mature leaf0.261
SRR3591708Shoot apex1.933
SRR3591709Stem2.175
SRR3591710White floral bud21.548
SRR3591711White flower5.186
SRR3591712Green floral bud10.074
SRR3591713Yellow flower3.537
SRP173429 SRR8316895Juvenile bud stage 8.624
SRR8316896Juvenile bud stage 12.293
SRR8316897Juvenile bud stage 1.258
SRR8316894Third green stage 3.365
SRR8316900Third green stage 25.868
SRR8316901Third green stage 24.091
SRR8316898Complete white stage 42.804
SRR8316899Complete white stage 49.234
SRR8316903Complete white stage 59.111
SRR8316902Silver flowering stage13.381
SRR8316904Silver flowering stage15.332
SRR8316905Silver flowering stage6.935
SRR8316906Gold flowering stage 12.866
SRR8316907Gold flowering stage 19.744
SRR8316908Gold flowering stage 8.510
SRP132670SRR6706286Control18.116
SRR6706287Light intensity 50%18.275
SRR6706288Light intensity 20%16.797
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.935
CNS0095593Slightly white alabastrum(diploid) 218.603
CNS0095594Slightly white alabastrum(diploid) 311.048
CNS0095595Whole white alabastrum(diploid) 213.208
CNS0095596Whole white alabastrum(diploid) 311.213
CNS0095597Whole white alabastrum(diploid) 410.441
CNS0095598Silvery flower (diploied) 16.981
CNS0095599Silvery flower (diploied) 27.449
CNS0095600Silvery flower (diploied) 326.596
CNS0095601Golden flower (diploid) 17.116
CNS0095602Golden flower (diploid) 211.568
CNS0095603Golden flower (diploid) 39.509
CNS0095604Slightly white alabastrum(tetraploid) 12.367
CNS0095605Slightly white alabastrum(tetraploid) 20.654
CNS0095606Slightly white alabastrum(tetraploid) 33.096
CNS0095607Whole white alabastrum(tetraploid) 11.701
CNS0095608Whole white alabastrum(tetraploid) 21.082
CNS0095609Whole white alabastrum(tetraploid) 31.644
CNS0095610Silvery flower (diploied) 15.149
CNS0095611Silvery flower (diploied) 23.171
CNS0095612Silvery flower (diploied) 34.004
CNS0095613Golden flower (tetraploid) 11.604
CNS0095614Golden flower (tetraploid) 22.524
CNS0095615Golden flower (tetraploid) 31.715
CRA001975CRR073297Stem 116.400
CRR073298Stem 213.822
CRR073299Stem 315.589
CRR073300Leaf 128.583
CRR073301Leaf 234.073
CRR073302Leaf 319.840
CRR073303Juvenile bud 144.008
CRR073304Juvenile bud 239.635
CRR073305Juvenile bud 379.827
CRR073306Third green 188.107
CRR073307Third green 2100.600
CRR073308Third green 375.006
CRR073309Second white 129.233
CRR073310Second white 226.588
CRR073311Second white 316.826
CRR073312Silver flowering 124.927
CRR073313Silver flowering 226.454
CRR073314Silver flowering 319.968
CRR073315Gold flowering 14.347
CRR073316Gold flowering 23.041
CRR073317Gold flowering 34.114
CRR073318Tawny withering 15.823
CRR073319Tawny withering 23.059
CRR073320Tawny withering 36.830