Gene detail

Detail information of GWHGAAZE015428

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281575.1	2.9375E-129	PREDICTED: glutathione S-transferase L3-like [Vitis vinifera]
Swissprot	tr\|Q9M2W2\|GSTL2_ARATH	5E-110	Glutathione S-transferase L2, chloroplastic (Precursor)
trEMBL	tr\|D7T492\|D7T492_VITVI	4E-129	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25324.3}
TAIR10	AT3G55040.1	2E-88	glutathione transferase lambda 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	39304213	39306359	+
GWHAAZE00000004	mRNA	39304213	39306359	+
GWHAAZE00000004	exon	39304213	39304223	+
GWHAAZE00000004	exon	39304407	39304481	+
GWHAAZE00000004	exon	39304651	39304711	+
GWHAAZE00000004	exon	39304828	39304914	+
GWHAAZE00000004	exon	39305236	39305334	+
GWHAAZE00000004	exon	39305411	39305513	+
GWHAAZE00000004	exon	39305613	39305689	+
GWHAAZE00000004	exon	39305848	39305955	+
GWHAAZE00000004	exon	39306300	39306359	+
GWHAAZE00000004	CDS	39304213	39304223	+
GWHAAZE00000004	CDS	39304407	39304481	+
GWHAAZE00000004	CDS	39304651	39304711	+
GWHAAZE00000004	CDS	39304828	39304914	+
GWHAAZE00000004	CDS	39305236	39305334	+
GWHAAZE00000004	CDS	39305411	39305513	+
GWHAAZE00000004	CDS	39305613	39305689	+
GWHAAZE00000004	CDS	39305848	39305955	+
GWHAAZE00000004	CDS	39306300	39306359	+

Transcript Sequence
>GWHTAAZE015444 ATGGCCACTGGAAACGTGCACGAGGCTCTCCCACCTGTTCTTGATTCTACCTCTGAACCTCCTGCAATTTTCGATGGAACAACAAGGCTCTACATATCCTACAGATGCCCTTATGCGCAACGAGTCTGGATTGCCCGTAATTATAAGGGATTGCAGGACAAGATCAAGTTGGTTCCTATTGACCTACAAAACAGACCAGCTTGGTACAAGGAGAAAGTTTACCCACCAAACAAGGTGCCATCTTTGGAACACAACAATGAGATTAAAGGAGAGAGTCTTGATTTGCTCAAATACATAGATAGTAACTTTGAAGGACCTTCCCTGACTCCTGATGATCCTGCCAAGAAAGAGTTTGCAGGAGAGTTGCTGTCATATACCGAGTCATTCAAAAAAGCTGTGACGTCTTCCTTCAAGGCAGAGGAGATCAATGAAGCTGCTGAAGCCTTCGACTACCTTGAGAAGGCTCTTTCCAAATTTGATGACGGGCCATTTTTCCTTGGCCAATTCAGTCTAGTGGATATAGCTTATGCTCCATTCATCGAAAGATTTCAGCCCTTTTTACTGGAAGTGAAGAAATATGACATTGCGGCAGGCAGGCCAAAACTAGGAATATGGATTGAGGAGATAAACAAAAATGAGGCTTATGCACCGACCCGAAGGGATCCAAAGGAGCTTGTTTAA

Network for GWHGAAZE015428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.7	GST_N_3	30	106	4.50E-20
PF13410.7	GST_C_2	143	206	5.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00799	GST, gst	Metabolic pathways	map01100
		Glutathione metabolism	map00480
		Metabolism of xenobiotics by cytochrome P450	map00980
		Drug metabolism - cytochrome P450	map00982
		Drug metabolism - other enzymes	map00983
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	52.473
	SRR3591706	second leaf	17.142
	SRR3591707	mature leaf	27.655
	SRR3591708	Shoot apex	36.071
	SRR3591709	Stem	59.370
	SRR3591710	White floral bud	20.894
	SRR3591711	White flower	19.620
	SRR3591712	Green floral bud	27.175
	SRR3591713	Yellow flower	19.074
SRP173429	SRR8316895	Juvenile bud stage	17.592
	SRR8316896	Juvenile bud stage	17.976
	SRR8316897	Juvenile bud stage	2.269
	SRR8316894	Third green stage	10.651
	SRR8316900	Third green stage	35.204
	SRR8316901	Third green stage	32.780
	SRR8316898	Complete white stage	12.976
	SRR8316899	Complete white stage	43.550
	SRR8316903	Complete white stage	18.588
	SRR8316902	Silver flowering stage	10.368
	SRR8316904	Silver flowering stage	9.194
	SRR8316905	Silver flowering stage	7.549
	SRR8316906	Gold flowering stage	19.187
	SRR8316907	Gold flowering stage	18.138
	SRR8316908	Gold flowering stage	8.108
SRP132670	SRR6706286	Control	30.779
	SRR6706287	Light intensity 50%	38.297
	SRR6706288	Light intensity 20%	38.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.162
	CNS0095593	Slightly white alabastrum(diploid) 2	14.681
	CNS0095594	Slightly white alabastrum(diploid) 3	13.442
	CNS0095595	Whole white alabastrum(diploid) 2	19.355
	CNS0095596	Whole white alabastrum(diploid) 3	14.209
	CNS0095597	Whole white alabastrum(diploid) 4	15.561
	CNS0095598	Silvery flower (diploied) 1	17.594
	CNS0095599	Silvery flower (diploied) 2	17.459
	CNS0095600	Silvery flower (diploied) 3	17.616
	CNS0095601	Golden flower (diploid) 1	16.980
	CNS0095602	Golden flower (diploid) 2	18.268
	CNS0095603	Golden flower (diploid) 3	17.749
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.511
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.451
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.945
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.464
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.468
	CNS0095610	Silvery flower (diploied) 1	11.362
	CNS0095611	Silvery flower (diploied) 2	14.998
	CNS0095612	Silvery flower (diploied) 3	13.633
	CNS0095613	Golden flower (tetraploid) 1	6.239
	CNS0095614	Golden flower (tetraploid) 2	8.740
	CNS0095615	Golden flower (tetraploid) 3	2.773
CRA001975	CRR073297	Stem 1	18.317
	CRR073298	Stem 2	15.647
	CRR073299	Stem 3	12.448
	CRR073300	Leaf 1	25.270
	CRR073301	Leaf 2	20.629
	CRR073302	Leaf 3	29.718
	CRR073303	Juvenile bud 1	28.894
	CRR073304	Juvenile bud 2	26.325
	CRR073305	Juvenile bud 3	26.258
	CRR073306	Third green 1	15.266
	CRR073307	Third green 2	13.785
	CRR073308	Third green 3	12.533
	CRR073309	Second white 1	21.453
	CRR073310	Second white 2	14.111
	CRR073311	Second white 3	12.297
	CRR073312	Silver flowering 1	10.252
	CRR073313	Silver flowering 2	9.192
	CRR073314	Silver flowering 3	8.141
	CRR073315	Gold flowering 1	16.889
	CRR073316	Gold flowering 2	23.890
	CRR073317	Gold flowering 3	22.619
	CRR073318	Tawny withering 1	24.162
	CRR073319	Tawny withering 2	23.973
	CRR073320	Tawny withering 3	19.409