Gene detail

Detail information of GWHGAAZE015712

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008224619.1	2.47796E-28	PREDICTED: uncharacterized protein LOC103324349 [Prunus mume]
trEMBL	tr\|A0A067K8G5\|A0A067K8G5_JATCU	4E-28	Uncharacterized protein {ECO:0000313\|EMBL:KDP28104.1}
TAIR10	AT5G07900.1	1E-20	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	54227331	54232237	-
GWHAAZE00000004	mRNA	54227331	54232237	-
GWHAAZE00000004	exon	54232204	54232237	-
GWHAAZE00000004	exon	54232025	54232119	-
GWHAAZE00000004	exon	54231800	54231926	-
GWHAAZE00000004	exon	54227331	54227620	-
GWHAAZE00000004	CDS	54232204	54232237	-
GWHAAZE00000004	CDS	54232025	54232119	-
GWHAAZE00000004	CDS	54231800	54231926	-
GWHAAZE00000004	CDS	54227331	54227620	-

Transcript Sequence
>GWHTAAZE015728 ATGAGCCAGTATAGAGTAGGTGGGAGCCCTACCGCATTGAGGTCTTCAAGGTTCAAGTTCTGGACAGCGGCATACCGGAATGCACTGGTTATGTGCAATGCTAGTATGCAGGCGTGGTGGCAAGGAAACAGAGGAAGTTCTAGAGGGAGAAAACTAGAGTTTCATTATACTCGGGTTTTGATCGTGTCTGCAATAAAGACTATCACCTTGATGGAGTGTGGCACTGCTGATACCTCCTTCTCTCTTGTGTTTGTTGAGCGAGTAATAGCCCTTCTCAGAACCCATGGATTCAGTGAAACCCAGATCTCAAAAGTGGTTAAAGTGCGCCCCACGATTCTTTTTTCAGATCCCAAGAAAACCCTAATTCCCAAGCTGGAGTTCTTTCGCTCCATAGGGTTATCAAGAACCGATCTGCCAAGAATTGTCTCGTCTAATCCGGTTCTGTTGATGAGCAGTTTAGAGAATCAGTTGATTCCTTATCATAACTTCCTCAAAAATGTACTGGTTCTTGATGAAAATGTTGTTAAGATGTTAAAGCGGAATTAG

Network for GWHGAAZE015712

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	90	179	6.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.565
	SRR3591706	second leaf	0.248
	SRR3591707	mature leaf	0.380
	SRR3591708	Shoot apex	0.899
	SRR3591709	Stem	0.399
	SRR3591710	White floral bud	0.894
	SRR3591711	White flower	0.306
	SRR3591712	Green floral bud	0.485
	SRR3591713	Yellow flower	0.278
SRP173429	SRR8316895	Juvenile bud stage	0.330
	SRR8316896	Juvenile bud stage	0.396
	SRR8316897	Juvenile bud stage	0.142
	SRR8316894	Third green stage	0.088
	SRR8316900	Third green stage	0.468
	SRR8316901	Third green stage	0.269
	SRR8316898	Complete white stage	0.267
	SRR8316899	Complete white stage	0.439
	SRR8316903	Complete white stage	0.303
	SRR8316902	Silver flowering stage	0.070
	SRR8316904	Silver flowering stage	0.078
	SRR8316905	Silver flowering stage	0.046
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.064
	SRR8316908	Gold flowering stage	0.090
SRP132670	SRR6706286	Control	0.131
	SRR6706287	Light intensity 50%	0.133
	SRR6706288	Light intensity 20%	0.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.411
	CNS0095593	Slightly white alabastrum(diploid) 2	0.662
	CNS0095594	Slightly white alabastrum(diploid) 3	1.605
	CNS0095595	Whole white alabastrum(diploid) 2	0.704
	CNS0095596	Whole white alabastrum(diploid) 3	0.673
	CNS0095597	Whole white alabastrum(diploid) 4	0.394
	CNS0095598	Silvery flower (diploied) 1	0.741
	CNS0095599	Silvery flower (diploied) 2	0.312
	CNS0095600	Silvery flower (diploied) 3	0.292
	CNS0095601	Golden flower (diploid) 1	0.698
	CNS0095602	Golden flower (diploid) 2	0.090
	CNS0095603	Golden flower (diploid) 3	0.221
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.054
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.069
	CNS0095610	Silvery flower (diploied) 1	0.083
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.059
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.147
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.137
	CRR073298	Stem 2	0.182
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.429
	CRR073301	Leaf 2	0.611
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.124
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.055
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.056
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.058
	CRR073320	Tawny withering 3	0.287