Gene detail

Detail information of GWHGAAZE015719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074907.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X2 [Sesamum indicum]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	3E-126	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4DBS8\|K4DBS8_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc12g008400.1.1}
TAIR10	AT4G20140.1	6E-111	Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	54586308	54607530	+
GWHAAZE00000004	mRNA	54586308	54607530	+
GWHAAZE00000004	exon	54586308	54586701	+
GWHAAZE00000004	exon	54588043	54588408	+
GWHAAZE00000004	exon	54594402	54594764	+
GWHAAZE00000004	exon	54604411	54605703	+
GWHAAZE00000004	exon	54607181	54607530	+
GWHAAZE00000004	CDS	54586308	54586701	+
GWHAAZE00000004	CDS	54588043	54588408	+
GWHAAZE00000004	CDS	54594402	54594764	+
GWHAAZE00000004	CDS	54604411	54605703	+
GWHAAZE00000004	CDS	54607181	54607530	+

Transcript Sequence
>GWHTAAZE015735 ATGGCGATAAATTCTTTCATTTTCGCAGTTTCATTGTTGTTGTTTCTAAATGGTTTCACATTTTGCTTATATACCAAGGATAAATTTGCACTTCTGGCAATCAAAACCAATATCAGTGATCATTCAGGCATCTTATCAAACAATTGGTCTGCAATTTCGAACGCCTCAATCTGCACCTGGATTGGTGTTTCCTGTGATTTAAACAACCAATCAGTCACTGCCTTGAATCTGTCCAGCATGGGTCTCACCGGCACTATCAATCCCGCTATCGGAAACCTCTCGTCCCTCACTTTACTTGACATCAGTTACAATAACTTCTCAGGTTCTATGCCTGAAGAGTTATCTCATTTGCATCATCTTCAATACTTGCGTTTATCCAACAACAGTTTCACAGGTACAATCCCAGCTTTGTTGGGCAATTTTACAAAGCTTGAGACATTGAATTTACGTTCCAATCAGCTTACAGGTTCTGTACCGGCTGCGATATTCAATATTTCTTCATTGAGAGCAATTAACCTCATCGATAATAACTTATTTGGTAGTCTTCCGGTGGATATCTGTAGTCATTATATTCCTAAACTCGAAAAAATTTATTTGTCCGAGAATCATTTCGAGGGAAAAATTCCACCGAGTTTATTCAAATGCAGGGAGCTTCAGCATCTGGCATTGTCAGCGAATGAATTTAGTGGCAGCATATCCATTGAAATTGGCAACTTAACTATGCTCGTGGACTTATGGCTTGGCTATAACAATTTGGAAGGTGAAATTCCAATGGAGATCGGTAATCTCAAACTTTTGGAGATATTGAACATACCAAATAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCTCTTTGAAAATAATCAATCTCAGAGAAAATAAGCTGACTGGAAGCTTCCCAATGGACATTCATTATAATATCCCTGTTCTTGAAGAGCTCTATCTTTATAAAAATCAAGTTAAGGGTCAGATTCCATCGTGCTTATGGGATTGTAGAGGACTTCGAATCATATCATTGTCCAAAAATAAACTCACAGGGAGTATACCTAAGAAAGTTGGGAACCTTACGTTGCTCAAAACTCTGGATCTTTCTGATAACAATTTCACAGGAACATTACCAAGTGAGTTTGGTAAGCTTAATTTGGAAAGACTCTATCTTGCTCATAACAGCTTAACCGGCCTTATACCTTTTGAAATCTTCAATATCTCAACAATCACTCGGATTTCTTTGTCATTCAATCACTTCTCGGGACATCTTTCATCTATCATGGGGCTTTGGACTCCCAATCTTGAAAGACTTTACTTAGGTGGCAATAGGCTCAGTGGATCAATCCCAAGCTCTATCTCGAATGCGTCTAAGCTTACTTTGATTGCGTTGTTTGACAACTCATTTACTGGCTTCATACCCAACACACTTGGTAATTTAAGAGATTTGCGAAAACTCTTTGTTGCAGGAAACAATTTGATAGGGGAAGTTTCCACTCCAGAATTAAGATTCTTTGATTCTTTGAGTAATTGCAAGAATTTGGAGCTTTTGACAATATCGCAAAATCAATTGAATGGAATCCTCCCAGCTTCAGTTGCGAATCTCTCAACTTCTTTTCGTAAGTTTTACGCATCTGGAAGCAAAATTAAGGGAAAAATTCCAATGGGAATAGGCAACTTGAGTGGCTTGTTGGCCCTATATTTAGATAGCAACGAGTTGACTGGGTTTATCCCATCAACGCTCGGAAGATTGAAAAATCTTCAACAATTGTATCTTGCAGACAACGATTTGAAAGGATCCATACCAAACGATCTTTGTCAATTAAAGAGGTTGGGAGACTTATATTTGAGTGATAATAAACTTGACGGACCTGTACCGTCATGTTTAGGAGAACTTAGTTCTGTGGAAAAGCTATTCTTAGATTCTAATAATTTGACTTCGATAATACCATCAACCTTGTGGAGCCTGGAAGATCTCTTGTACCTAAACTTATCCATGAATTCTCTTATTGGTAGTTTACCATCTGATATTGGAAATCTGAAGATGATAACAAAAATGGACTTATCGTTTAATCAGTTTTCGGGTCATATCCCAAGTACCATTGGGAGCAAGCAAATGCTAACTTTACTCTCTTTTGCGCATAATGCACTACAAGGATCCATTCCTCAATCATATAATAAGTTGATAAACTTAGAATTTTTGGATCTATCCAATAACAATTTGTCTGGAACGATACCCAAATCCCTTGAGGCACTTAGGTATCTCCAATACTTTAATGTGTCTTTCAATAGATTAGAAGGAGAAATTCCCATCGGAGGACATTTTGCTAATTTCACTGCACAGTCTTTTATGCAAAATGATGGATTATGTGGGTTGCCTCGATTACAAGTCCAGCCATGCAAAAGATCGCGGTCTAAATATATAAGAGAAGGAATAGTATCCACGGCATCAGATGTCTACAGCTACGGTATTCTATTAATGGAAACATTCACAAGGAAGAAGCCAACAGATGAAATGTTTTCTGACAATTTAACTATGAGGAATTGGGTTTATGAAGCATCACTCGGTTCAATAGTTCAAGTTGTAGATGCTTATTTGATAAGAAAAGAAGATGAAGATTTCTTGTCTAAGAAGGAATGTGCCACATCCATCTTACATTTGGCCTTGGATTGTTCTACAAATATTCCTACAGAGAGGATCAGCATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACTTTTCTAACGAACACTGGATAA

Network for GWHGAAZE015719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	26	66	4.50E-07
PF13855.7	LRR_8	71	129	8.70E-08
PF13855.7	LRR_8	337	396	2.00E-07
PF13855.7	LRR_8	433	493	3.60E-07
PF13855.7	LRR_8	564	621	2.60E-08
PF13855.7	LRR_8	634	693	1.10E-07
PF00560.34	LRR_1	730	752	0.046
PF07714.18	PK_Tyr_Ser-Thr	808	908	6.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.100
	SRR3591706	second leaf	0.716
	SRR3591707	mature leaf	1.303
	SRR3591708	Shoot apex	0.027
	SRR3591709	Stem	0.142
	SRR3591710	White floral bud	0.046
	SRR3591711	White flower	0.101
	SRR3591712	Green floral bud	0.267
	SRR3591713	Yellow flower	0.029
SRP173429	SRR8316895	Juvenile bud stage	0.153
	SRR8316896	Juvenile bud stage	0.396
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.040
	SRR8316900	Third green stage	0.030
	SRR8316901	Third green stage	0.071
	SRR8316898	Complete white stage	0.047
	SRR8316899	Complete white stage	0.038
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.004
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.061
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.046
SRP132670	SRR6706286	Control	0.520
	SRR6706287	Light intensity 50%	0.446
	SRR6706288	Light intensity 20%	0.147
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.323
	CNS0095593	Slightly white alabastrum(diploid) 2	0.537
	CNS0095594	Slightly white alabastrum(diploid) 3	0.556
	CNS0095595	Whole white alabastrum(diploid) 2	0.031
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.226
	CNS0095598	Silvery flower (diploied) 1	0.816
	CNS0095599	Silvery flower (diploied) 2	0.571
	CNS0095600	Silvery flower (diploied) 3	0.215
	CNS0095601	Golden flower (diploid) 1	0.148
	CNS0095602	Golden flower (diploid) 2	0.383
	CNS0095603	Golden flower (diploid) 3	0.280
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.047
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.059
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.112
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.018
	CNS0095610	Silvery flower (diploied) 1	0.016
	CNS0095611	Silvery flower (diploied) 2	0.000
	CNS0095612	Silvery flower (diploied) 3	0.051
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.017
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.018
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.307
	CRR073316	Gold flowering 2	6.247
	CRR073317	Gold flowering 3	2.072
	CRR073318	Tawny withering 1	1.345
	CRR073319	Tawny withering 2	1.946
	CRR073320	Tawny withering 3	0.001