Gene detail

Detail information of GWHGAAZE015791

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006490007.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Citrus sinensis]
Swissprot	tr\|Q9FL28\|FLS2_ARATH	3E-89	LRR receptor-like serine/threonine-protein kinase FLS2 (Precursor)
trEMBL	tr\|A0A068TX96\|A0A068TX96_COFCA	2E-157	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP00866.1}
TAIR10	AT5G46330.1	2E-73	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	57410920	57423533	+
GWHAAZE00000004	mRNA	57410920	57423533	+
GWHAAZE00000004	exon	57410920	57411313	+
GWHAAZE00000004	exon	57413460	57413753	+
GWHAAZE00000004	exon	57416461	57416823	+
GWHAAZE00000004	exon	57420766	57421554	+
GWHAAZE00000004	exon	57423184	57423533	+
GWHAAZE00000004	CDS	57410920	57411313	+
GWHAAZE00000004	CDS	57413460	57413753	+
GWHAAZE00000004	CDS	57416461	57416823	+
GWHAAZE00000004	CDS	57420766	57421554	+
GWHAAZE00000004	CDS	57423184	57423533	+

Transcript Sequence
>GWHTAAZE015807 ATGGCGCGAAATTCTTTCATTTTCACGGTTTCATTGTTGTTGTTGCTAAATGGTTTCGCATTTTGCTTATATACTATGGATAAATTTGCACTTCTGACAATCAAAACCAATATCATTGACCATTCAGGCATTTTATCAAACAATTGGTCTGCAACTTCCAACGCCTCAATCTGCACCTGGATTGGTGTTTCATGTGATTTAAACAACCAATCTGTCACTGCTTTGAATCTCTCTGGCATGGGTCTCGCCGGCACTGTCACTTCGGTTATCGGAAACCTCTCATCCCTCACTTCACTTGACATCAGTCACAATAAATTCTCTGGTTCTGTGCCTGAAGAGTTATCTCATTTGCATCATCTTCAACAATTGCTTTTATTCAACAACAATTTCACAGGTTCTGTACCGGCTGCGATATTCAACATTTCTTCATTGAGAATTATTAATCTCAGAGCTAATAACTTATGTGGCAGTCTTCCGGTGGATATTTGTAGTCAATCTGTTCCTAAACTCGAACAAATTTTTTTGTCCTTGAATCATTTTGAGGGGAAAATTCCGCCGAGTTTATTCAAATGTAGGGAGCTTCAGAATCTGTCATTGTCATTCAATGAATTTAGCGGCAGCATACCCATTGAAATTGGCAACTTGACTATGCTCAAGGACTTACGGCTTGGCTTTAACAATTTGGAAGGTGAAATTCCAGAGGAGATTGGTAATCTCAAACTTTTGGAGATGTTGAAAATACCAAGAAGCTCTCTAACAGGACCTATTCCTAATGTTATCTTTAACATGTCCGCTTTGAAAATAATCAATCTCATGGAAAATAAGCTGACTGGAAGCTTCCCAATGGACATTCATTATAATCTCCCTGCTCTTGAAGAGCTCTATCTATTTAAAAATCAGCTTAAGGGTCAGATTCCATCATGGTTATTGGATTGCAAAGGACTTCGAATTATAGCATTGTCTGAAAATAAATTCACAGGGAGCATACCTAAGAAAGTTGTGAACCTTACGTTGCTCAAAGGCCTGGATCTTTCTGATAACAATTTCATAGACATGTCTATCAACTCATTCACTGGCTTTATACCCAACACACTTGGGAATTTAAGAGATTTGCAACAACTCTTTGTTGATCGAAACAATTTGACTGGGGAAGTTTCCATTCCAGAATTGAGATTCTTCGATTCATTGAGTAATTGCAAGAATTTGTACTTTTTGTCGATATCGCTAAATCAATTGAATGGAATCCTCCCAGCTTCAGTTGTGAATCTCTCGATTTCTCTTCGTAATTTTGAAGCATTTGGAAGCAAAATTAAGGGCGAAATTCCAATGGGAATAGGCAAATTGAGTGGCCTATCGACCCTAAGTTTAAATAGCAATGAGTTGACTGGGTTCATCCCATCATCTCTCGGAAGATTGAAAAATCTTGACCAATTGTATCTTCAACACAACGATTTGAAAGGATCCATACCAAATGATCTTTGCCGGTTAAAGAGGTTGGGAGACTTATATTTGAGTGATAATAAACTCGAAGGACCTATACCGTCATGTTTAGGAGAACTTAGTTCTATGACAAGGGTGTTCTTAGATTCTAATAATTTGACTTCGACAATACCATCAACCTTGTGGAGCCTAGAAGATCTCTTGTACCTAAACTTCTCCACAAATTCTCTTACTGGTAGTTTACCATCAGATATTGGAAATATGAAGGTGATAACAAAAATGGACTTATCGTTGAATCGTTTTTCGGGCCGTATCCCAAGTACCATTGGGAGTGGCCAAATGCTAACTTTTCTCTCGTTTGCGCATAATAAACTACAAGGATCCATTCCTCAGTCATTTGAATATATAAGAGAAGGAGTAGTATCCACGAAAGGAGATGTCTACAGCTACGGTATTCTATTAATGGAAACATTCACAAGGAAGAGGCCAACAGATGAAATGTTTTACGACAATTTGACTATGAGGAATTGGGTTTATGAAGCATCACTCAGTTCAATAGTTCAAGTTGTAGACGCCAATTTGATAAGAAAAGAAAATGAAGATTTCTTGCCCAAGAAGGAATGTGCCTCATCCGTTTTGCACTTGGCCTTGGATTGTTCGACAAGTATTCCTATACAGAGGATCACCATGGAAGATGTCGTGGTTAGACTCAACAAAATCAAAATTACTTTTCTAACTAACACTGGATAA

Network for GWHGAAZE015791

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	27	66	5.80E-07
PF13855.7	LRR_8	71	130	3.70E-07
PF13855.7	LRR_8	289	349	1.40E-06
PF13855.7	LRR_8	450	509	2.30E-08
PF07714.18	PK_Tyr_Ser-Thr	612	716	6.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XII-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.127
	SRR3591707	mature leaf	0.337
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.034
	SRR3591712	Green floral bud	0.007
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.138
	SRR8316896	Juvenile bud stage	0.346
	SRR8316897	Juvenile bud stage	0.008
	SRR8316894	Third green stage	0.031
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.047
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.015
SRP132670	SRR6706286	Control	0.012
	SRR6706287	Light intensity 50%	0.012
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.035
	CNS0095593	Slightly white alabastrum(diploid) 2	0.190
	CNS0095594	Slightly white alabastrum(diploid) 3	0.020
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.016
	CNS0095598	Silvery flower (diploied) 1	0.230
	CNS0095599	Silvery flower (diploied) 2	0.037
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.195
	CNS0095602	Golden flower (diploid) 2	0.093
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.137
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.093
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.022
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (diploied) 1	0.007
	CNS0095611	Silvery flower (diploied) 2	0.004
	CNS0095612	Silvery flower (diploied) 3	0.018
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.005
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.078
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.148
	CRR073316	Gold flowering 2	1.288
	CRR073317	Gold flowering 3	0.121
	CRR073318	Tawny withering 1	0.231
	CRR073319	Tawny withering 2	0.207
	CRR073320	Tawny withering 3	0.000